Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN47_RS12710 Genome accession   NZ_CP096149
Coordinates   2525857..2528253 (+) Length   798 a.a.
NCBI ID   WP_070034080.1    Uniprot ID   A0A823JCI0
Organism   Listeria monocytogenes strain FSL J1-0158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2520857..2533253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN47_RS12690 (MZN47_12685) - 2522010..2523158 (+) 1149 WP_003738992.1 cysteine desulfurase family protein -
  MZN47_RS12695 (MZN47_12690) mnmA 2523177..2524292 (+) 1116 WP_070034079.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN47_RS12700 (MZN47_12695) - 2524410..2525150 (+) 741 WP_003738991.1 alpha/beta hydrolase -
  MZN47_RS12705 (MZN47_12700) - 2525191..2525829 (+) 639 WP_077952318.1 tetratricopeptide repeat protein -
  MZN47_RS12710 (MZN47_12705) recD2 2525857..2528253 (+) 2397 WP_070034080.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN47_RS12715 (MZN47_12710) pieS 2528293..2529732 (-) 1440 WP_070034081.1 two component system sensor histidine kinase PieS -
  MZN47_RS12720 (MZN47_12715) pieR 2529729..2530415 (-) 687 WP_070034082.1 two component system response regulator PieR -
  MZN47_RS12725 (MZN47_12720) - 2530582..2532087 (+) 1506 WP_070034083.1 ABC transporter permease -
  MZN47_RS12730 (MZN47_12725) - 2532096..2532791 (+) 696 WP_003725979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90136.25 Da        Isoelectric Point: 4.8362

>NTDB_id=679772 MZN47_RS12710 WP_070034080.1 2525857..2528253(+) (recD2) [Listeria monocytogenes strain FSL J1-0158]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKANRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILMSQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTADNITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=679772 MZN47_RS12710 WP_070034080.1 2525857..2528253(+) (recD2) [Listeria monocytogenes strain FSL J1-0158]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAGCTTTTCATGAAGGGCACGATGCTGTCCACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTAGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCACTTCACGAGCAAGAAGTGTACACTTTCTATGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAAACCGGTTTCGTAAAGAAATGCCACAATCACGCGCGGGCTTAATTAATTATCTATCCGG
TGAACTTTTTAAAGGTATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATCC
TATCCGATCCGAGTTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTCTGCTTGCTTCCCTAAGAGAA
AATCAAGGGTTGGAGCACGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGAATTGGTTTTCAGC
GGGCTGATGAACTTGGGCGGAAACTAGGTCTTGGTGGGAATCATCCAGAACGACTGCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTTGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAATGTCTCAAGTAGAAAAATTAGCCGAAGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCACTCTATTATTCAGAGAGCGGCTTTGCCTATCATGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAGCAATTCCCACAGTCCGAATTTTTGCTAGCTCTCGGAGAATTAGAGGAACGGATTGGCGTTCACTA
CGGGGATTCGCAACGTCAAGCCTTGGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGAA
AAACAACGGTCATTAAAGGGATAGTAGAGTTGTACGCGGAGCTAAATGGTGTGAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACCGGACTTCCAGC
GATGACTATTCACCGTCTACTTGGAATGAACGGCCAGGAACAAATGGATGATGATGCAGAGCGGCTGATTGATGGACGAC
TGTTGATTGTAGATGAGATGTCGATGGTTGACATTTGGCTAGCTAACCAATTATTCCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGTGACCAAGATCAATTGCCGTCAGTCGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCGCTTTCAGATATTTATCGCCAAAAGGATGGTTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AGGGCATGTTGCCAGCTGATTTCACCAAAAATAGCGCGGATCGCTCTTTTTTTCACTGTACGGTAAACCAAATTGGTGAT
GTAGTCGAACAAGTGGTGAAAAATGCAAAAAACAAAGGCTTTCGAGCAAAAGACATCCAAGTTTTAGCGCCGATGTATCG
TGGTCCAGCAGGGATTGACATTTTAAATAAAAAACTACAAGAAATATTTAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTACAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATTGGTGAAATTGTGTCTATTATCTACGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATTGTGATTATGCCAATTGTCCGCAGTTACTACCGGATGTTACGCCGCGATTTACTTTATACCGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGAGAAGAAGAAGCTTTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGTAATACAACTCTCTCTGAACGTTTAATGAGCGAAGATGTCTTATTAGAACAAATGACGAATAAACGAATTCTTA
CTGCTGACAATATTACCGAAATAGATCCGATGATTGGAATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A823JCI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565