Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH128_RS03775 Genome accession   NZ_CP109813
Coordinates   750517..751065 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain CC20JX12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 745517..756065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH128_RS03745 (OH128_03745) ctsT 745559..745864 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  OH128_RS03750 (OH128_03750) proC 745861..746598 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  OH128_RS03755 (OH128_03755) fliW 746598..746987 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  OH128_RS03760 (OH128_03760) - 747152..747799 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OH128_RS03765 (OH128_03765) lon 747815..750190 (+) 2376 WP_002783351.1 endopeptidase La -
  OH128_RS03770 (OH128_03770) rpsR 750246..750506 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  OH128_RS03775 (OH128_03775) ssb 750517..751065 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  OH128_RS03780 (OH128_03780) rpsF 751074..751451 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  OH128_RS09345 - 751732..753005 (+) 1274 Protein_744 MFS transporter -
  OH128_RS03795 (OH128_03795) - 753002..754006 (+) 1005 WP_264378420.1 sugar phosphate isomerase/epimerase -
  OH128_RS03800 (OH128_03800) - 753999..754856 (-) 858 WP_057040202.1 VirK family antimicrobial peptide resistance protein -
  OH128_RS03805 (OH128_03805) rseP 754853..755956 (-) 1104 WP_060794051.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=679772 OH128_RS03775 WP_002777084.1 750517..751065(-) (ssb) [Campylobacter coli strain CC20JX12]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=679772 OH128_RS03775 WP_002777084.1 750517..751065(-) (ssb) [Campylobacter coli strain CC20JX12]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCATAGCGTTCAAGTTGAAAATATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379