Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OBG92_RS02385 Genome accession   NZ_CP109657
Coordinates   513072..513797 (-) Length   241 a.a.
NCBI ID   WP_053816573.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Zw26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508072..518797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS02360 (OBG92_00460) - 508537..509052 (+) 516 WP_012074059.1 glycine cleavage system protein R -
  OBG92_RS02365 (OBG92_00461) rarD 509741..510637 (-) 897 WP_012074060.1 EamA family transporter RarD -
  OBG92_RS02370 (OBG92_00462) - 510848..511822 (-) 975 WP_053813274.1 serine/threonine protein kinase -
  OBG92_RS02375 (OBG92_00463) - 511884..512642 (-) 759 WP_256157195.1 TOBE domain-containing protein -
  OBG92_RS02380 (OBG92_00464) - 512710..513030 (-) 321 WP_034080855.1 YfiM family lipoprotein -
  OBG92_RS02385 (OBG92_00465) comF 513072..513797 (-) 726 WP_053816573.1 ComF family protein Machinery gene
  OBG92_RS02390 (OBG92_00466) - 513936..514229 (-) 294 WP_003157986.1 hypothetical protein -
  OBG92_RS02395 (OBG92_00467) - 514283..515200 (-) 918 WP_034080857.1 LysR family transcriptional regulator -
  OBG92_RS02400 (OBG92_00468) - 515329..516087 (+) 759 WP_003157984.1 5-oxoprolinase subunit PxpA -
  OBG92_RS02405 (OBG92_00469) - 516152..516400 (+) 249 WP_003157983.1 acetyl-CoA carboxylase -
  OBG92_RS02410 (OBG92_00470) - 516411..517784 (+) 1374 WP_043098994.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  OBG92_RS02415 (OBG92_00471) - 517786..518664 (+) 879 WP_034080859.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27125.89 Da        Isoelectric Point: 11.1188

>NTDB_id=679657 OBG92_RS02385 WP_053816573.1 513072..513797(-) (comF) [Pseudomonas aeruginosa strain Zw26]
MSFPLQYLPRWLAPAPACLLCAARSDQPPRPLCRACATELPWSGRQCRRCALSLPLDGQLCGECLRRPPTYEQVIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPVRLLPVPLAPRRERRRGFNQARLLADWLAGELRLRCAP
HLLRRVLDTPAQQGLDAALRRRNLRHAFALAPGKEVRGLHLALVDDVLTTGATAECLARLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=679657 OBG92_RS02385 WP_053816573.1 513072..513797(-) (comF) [Pseudomonas aeruginosa strain Zw26]
ATGTCGTTCCCGCTCCAGTATCTGCCGCGCTGGCTCGCGCCGGCACCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
ACCGCCTCGTCCGCTGTGCCGAGCCTGCGCGACCGAGCTGCCCTGGTCGGGCCGGCAATGCCGGCGCTGCGCCCTGTCCC
TGCCGCTGGATGGGCAGTTGTGCGGCGAGTGCCTGCGCCGCCCACCAACCTATGAGCAGGTAATAGCGCCCTGGCGCTAC
GCCTTCCCGCTGGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGACGGCTGCTCGGCGAACTGCT
GGCGGAGCACCTGCGACAACGCTATGCCGAAGGCCTGCCGCGCCCCGTACGCCTGCTGCCGGTCCCGCTGGCGCCACGCC
GCGAACGTCGCCGCGGCTTCAACCAGGCGCGGTTGCTCGCCGACTGGCTGGCCGGCGAACTACGCCTGCGCTGCGCACCG
CACCTGCTTCGGCGTGTGCTCGACACCCCTGCCCAGCAGGGCCTGGATGCCGCGCTGCGACGGCGCAATCTGCGCCACGC
CTTCGCCCTGGCCCCCGGCAAGGAGGTTCGCGGCCTGCACCTGGCGCTGGTCGACGACGTGCTCACCACCGGCGCCACCG
CCGAATGCCTCGCCCGCCTGTTGCGCCGGGCGGGCGCGGCGCGGGTTGACGTCTATTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.326

94.191

0.361