Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG776_RS28010 Genome accession   NZ_CP109592
Coordinates   6580764..6582497 (-) Length   577 a.a.
NCBI ID   WP_148013845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01689     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6575764..6587497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG776_RS28000 (OG776_27990) - 6577428..6578723 (+) 1296 WP_148013847.1 sigma-70 family RNA polymerase sigma factor -
  OG776_RS28005 (OG776_27995) rcrQ 6578836..6580764 (-) 1929 WP_329326532.1 ABC transporter ATP-binding protein Regulator
  OG776_RS28010 (OG776_28000) rcrP 6580764..6582497 (-) 1734 WP_148013845.1 ABC transporter ATP-binding protein Regulator
  OG776_RS28015 (OG776_28005) - 6582705..6584159 (-) 1455 WP_148013844.1 FGGY family carbohydrate kinase -
  OG776_RS28020 (OG776_28010) - 6584330..6584635 (-) 306 WP_148013843.1 YtxH domain-containing protein -
  OG776_RS28040 (OG776_28030) - 6585767..6586516 (-) 750 WP_148013842.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62688.84 Da        Isoelectric Point: 6.5080

>NTDB_id=679371 OG776_RS28010 WP_148013845.1 6580764..6582497(-) (rcrP) [Streptomyces sp. NBC_01689]
MLIRLLRTHLSPYKKPIALLVFLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIVLALGLDVPLSAI
LVAVVPLLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRGANTELTEMSLATGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVLELRRHGHLEIRGAGFRYPGAEEPVLRSVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGEDVA
SVEPRLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKGFVEQLDNGLHSAIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETSEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=679371 OG776_RS28010 WP_148013845.1 6580764..6582497(-) (rcrP) [Streptomyces sp. NBC_01689]
GTGCTCATACGACTGCTTCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTCCTGGTGTTCCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCGACCCTGAACGCGCACATCATCGACAACGGCGTGGTCAAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTCTGCAACATCGGAGCCGTCTACTACGGAGCC
CGGACGGCGTCGGCCGTCGGCCGGGACATCCGCGCGGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
TCATTTCGGTGCCCCGTCGCTGATCACCCGCACCACGAACGACGTGCAGCAGGTCCAGATGCTGACGCTGATGACGTTCA
CGCTGCTGGTGTCCGCACCGATCATGTGTGTGGGCGGCATCGTGCTCGCGCTCGGCCTGGACGTGCCGCTGTCCGCGATC
CTGGTCGCCGTGGTGCCCCTCCTCGGCATCGGGGTGACGCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCCGGGGCGCGAACACCGAACTGACCGAGATGTCCCTCGCCACCGGACGCATGCTCGCCCTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGCGCCCACCGCATCGCGAGCGG
CGGCATGCAGATCGGTGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCTCCAGCGTCGTACCG
CCCACCGCGCCCGTCCTGGAGTTGCGCCGCCACGGCCATCTGGAGATCCGCGGTGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCCGTGCTGAGGTCGGTCGACCTGGTGGCGCGGCCGGGTGAGGTGACGGCCGTGATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGCCAGGTCCTGGTGGACGGCGAGGACGTGGCG
TCCGTGGAACCGCGGCTGCTGGCCAGGACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCGAG
CAACCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCCCAGGCCAAGGGCTTCG
TGGAGCAGCTGGACAACGGCCTGCACTCGGCGATCGCGCAGGGTGGCACGAACGTGTCGGGCGGTCAGCGCCAGCGCCTC
GCGATCGCGCGCACCCTCGTGCAGCGTCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCACTCGACTACGCCACGGA
CGCGGCGCTGCGGGCCGCGCTCGCCGAGGAGACCTCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGCGTCGTCGGCACCGGACGCCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.894

97.747

0.39