Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MY490_RS05610 Genome accession   NZ_CP096034
Coordinates   1190253..1192610 (+) Length   785 a.a.
NCBI ID   WP_248268341.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185253..1197610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS05575 (MY490_05575) - 1185420..1185752 (+) 333 WP_056472677.1 DUF4257 domain-containing protein -
  MY490_RS05580 (MY490_05580) - 1185796..1186008 (+) 213 WP_056472680.1 hypothetical protein -
  MY490_RS05585 (MY490_05585) - 1186196..1186276 (+) 81 Protein_1014 IS200/IS605 family transposase -
  MY490_RS05590 (MY490_05590) - 1186619..1187035 (+) 417 WP_056472685.1 Rrf2 family transcriptional regulator -
  MY490_RS05595 (MY490_05595) - 1187090..1188235 (+) 1146 WP_248268338.1 cysteine desulfurase family protein -
  MY490_RS05600 (MY490_05600) mnmA 1188264..1189382 (+) 1119 WP_248268339.1 tRNA 2-thiouridine(34) synthase MnmA -
  MY490_RS05605 (MY490_05605) - 1189556..1190215 (+) 660 WP_248268340.1 tetratricopeptide repeat protein -
  MY490_RS05610 (MY490_05610) recD2 1190253..1192610 (+) 2358 WP_248268341.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MY490_RS05615 (MY490_05615) - 1192723..1192911 (+) 189 WP_248268342.1 hypothetical protein -
  MY490_RS05620 (MY490_05620) - 1192925..1193059 (+) 135 WP_248268343.1 DUF3918 family protein -
  MY490_RS05625 (MY490_05625) - 1193617..1194684 (+) 1068 WP_248268344.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88077.58 Da        Isoelectric Point: 5.0093

>NTDB_id=679306 MY490_RS05610 WP_248268341.1 1190253..1192610(+) (recD2) [Gottfriedia acidiceleris strain LH14]
MQTQSEMELFVDETPYIKGHITTIIFYNAENFYTVAKVKVVDTNLSNCEQEMTITGNIPRMNEDETYTFKGIVKDHPRYG
KQFQISSFEKELPSTKKGVIQYLSSDLFKGIGKKTAEKIVDHLGEGAINKILDNADSLEGVPGLAKSKAKEIYETILSHQ
GLEKVISFLSSYGIGTGLSIKIYKTYNESTLDVIRTNPFKLIEDVDGIGFGRADEIGRAIGITGNHPDRIRAGCIYILEH
LSMQEGHVYITQDQFIDETRQLLMKQDKELVEAVDISREMKRLVADGKLVMEDERIYLAALYYAEKGIVNAIQKLLSSAP
DLGEMTETRFSKELEDLESKMNVKYAPSQAQAIKKAMESAMMVLTGGPGTGKTTVIKGIVNLFSTIHDLSLDQHSYPKDD
PFPYLLAAPTGRAAKRMSEATGLPAVTIHRLLGWTREGEFSHHEENPLNGKLLIIDEFSMVDVWLGNQLLKSIPEGCQVI
FVGDEDQLPSVGPGQVLKDLLNSGTVPTVRLKDIYRQSEDSSIITLAHYIKDGTISEDLFEQRKDRSFIGCSSQQVVEVV
KKVCENANKKGFPVRDIQVLAPMYRGPAGIDALNEGLQEVFNPKKEKQREMNFGDTTFRTGDKVLQLVNVPENNVFNGDM
GEIVNIFFAKENVEQQDIMIVSFDGNEVTYTRPDFSQLTLAYCCSIHKSQGSEFDIIVLPIVKSYYRMLRRNLIYTAVTR
SKKFLIMCGEQDAFIQGIGRTDDGQRQTTLCMKLKGIENGEVQLNEDLPFQLSDELPNLSPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=679306 MY490_RS05610 WP_248268341.1 1190253..1192610(+) (recD2) [Gottfriedia acidiceleris strain LH14]
ATGCAAACCCAAAGTGAAATGGAATTGTTTGTTGATGAGACGCCCTATATTAAAGGGCATATCACAACAATCATCTTTTA
TAATGCAGAAAATTTTTATACTGTTGCGAAGGTAAAAGTGGTTGATACAAATTTATCAAATTGTGAACAGGAAATGACCA
TTACTGGGAATATTCCAAGGATGAATGAAGATGAAACATATACATTTAAGGGGATTGTAAAAGACCATCCGAGGTATGGT
AAACAATTTCAAATTTCTTCATTTGAAAAAGAGCTTCCATCTACCAAAAAAGGTGTTATTCAATATTTATCCTCAGATTT
GTTTAAAGGAATAGGAAAGAAAACAGCTGAAAAAATCGTTGATCATTTAGGTGAAGGTGCAATTAATAAAATTTTAGATA
ATGCTGATAGCTTAGAAGGTGTTCCCGGGCTGGCAAAATCAAAAGCTAAAGAAATTTATGAAACAATTCTATCTCATCAA
GGTCTTGAAAAAGTAATCAGCTTTTTAAGTAGCTACGGCATTGGAACAGGTTTATCCATTAAAATTTATAAGACTTATAA
TGAATCAACTCTAGATGTTATCAGAACAAATCCATTTAAGTTAATTGAAGATGTAGATGGGATTGGGTTTGGAAGAGCAG
ATGAAATTGGTCGAGCAATCGGTATTACGGGAAATCATCCGGATCGTATACGTGCGGGTTGTATTTATATTTTAGAACAT
TTATCGATGCAAGAAGGCCATGTGTATATAACGCAAGATCAGTTTATTGATGAAACTAGACAATTATTAATGAAACAGGA
TAAAGAGCTTGTCGAAGCAGTCGACATTTCTCGGGAAATGAAACGATTGGTAGCAGACGGAAAGCTAGTAATGGAAGATG
AGAGAATCTATTTAGCTGCGCTTTATTATGCTGAGAAAGGCATTGTAAATGCAATCCAAAAATTATTAAGCAGTGCTCCA
GATTTAGGAGAAATGACTGAAACTAGATTTTCAAAAGAGCTAGAAGATCTCGAATCAAAAATGAATGTAAAATATGCCCC
TTCACAAGCCCAAGCAATCAAAAAGGCAATGGAGTCAGCTATGATGGTCCTTACAGGTGGACCAGGGACAGGTAAAACGA
CAGTTATTAAAGGAATTGTTAATCTGTTTTCAACTATCCATGATTTATCATTAGATCAGCATTCTTACCCAAAAGATGAT
CCATTCCCTTATTTGCTTGCAGCACCTACAGGTAGAGCGGCAAAAAGAATGAGTGAAGCAACTGGCTTACCGGCAGTGAC
AATCCATCGCTTACTCGGTTGGACAAGAGAAGGGGAGTTTAGCCATCACGAGGAAAATCCTTTAAATGGAAAGTTGCTAA
TCATTGATGAGTTTTCAATGGTTGATGTTTGGTTAGGGAATCAATTACTCAAAAGCATTCCAGAAGGCTGCCAAGTCATT
TTTGTAGGGGATGAGGATCAATTACCTTCTGTTGGCCCAGGTCAGGTCTTAAAGGATTTATTAAACTCTGGTACAGTTCC
AACAGTACGATTAAAAGACATTTACCGTCAATCAGAAGATTCATCGATCATCACGCTTGCACATTATATAAAAGATGGAA
CAATATCCGAGGATTTATTTGAACAAAGAAAAGATCGTTCATTCATCGGTTGTTCAAGTCAACAAGTTGTTGAAGTCGTC
AAAAAAGTGTGTGAAAACGCCAATAAAAAAGGTTTTCCTGTAAGAGATATTCAAGTTTTAGCTCCGATGTATCGTGGTCC
AGCAGGAATTGATGCCCTAAATGAAGGGCTACAAGAGGTGTTTAACCCTAAAAAAGAAAAGCAACGTGAAATGAATTTTG
GTGATACAACTTTTCGTACAGGTGATAAAGTTCTCCAACTCGTAAACGTTCCTGAGAATAATGTTTTTAATGGAGATATG
GGTGAAATTGTCAATATTTTTTTCGCCAAAGAAAATGTAGAGCAACAAGATATTATGATCGTTTCATTTGATGGAAATGA
AGTGACGTATACTAGACCAGATTTTTCTCAATTAACTCTTGCTTACTGTTGTTCAATACATAAGTCTCAAGGTAGTGAAT
TTGATATTATTGTGCTTCCGATTGTCAAAAGTTATTATCGGATGCTTCGAAGAAATTTAATTTACACTGCAGTGACAAGA
AGTAAGAAGTTCTTAATCATGTGCGGAGAACAAGATGCATTTATTCAAGGCATTGGAAGAACAGATGATGGTCAAAGACA
AACTACTCTATGTATGAAACTAAAAGGGATTGAAAATGGTGAAGTACAACTAAACGAAGATTTACCATTTCAGCTTTCAG
ACGAATTACCAAATCTTTCACCTTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)

AAA domain (AAA_30)

(345-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.003

100

0.541