Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MY490_RS05500 Genome accession   NZ_CP096034
Coordinates   1168540..1170891 (+) Length   783 a.a.
NCBI ID   WP_248268325.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163540..1175891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS05485 (MY490_05485) - 1164833..1165111 (+) 279 WP_098232594.1 post-transcriptional regulator -
  MY490_RS05490 (MY490_05490) secDF 1165214..1167451 (+) 2238 WP_248268323.1 protein translocase subunit SecDF -
  MY490_RS05495 (MY490_05495) - 1167589..1168500 (+) 912 WP_248268324.1 cation diffusion facilitator family transporter -
  MY490_RS05500 (MY490_05500) recJ 1168540..1170891 (+) 2352 WP_248268325.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MY490_RS05505 (MY490_05505) - 1170891..1171403 (+) 513 WP_248268326.1 adenine phosphoribosyltransferase -
  MY490_RS05510 (MY490_05510) - 1171566..1173761 (+) 2196 WP_248268327.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MY490_RS05515 (MY490_05515) dtd 1173777..1174217 (+) 441 WP_248268328.1 D-aminoacyl-tRNA deacylase -
  MY490_RS05520 (MY490_05520) - 1174350..1174529 (+) 180 WP_097978435.1 hypothetical protein -
  MY490_RS05525 (MY490_05525) - 1174878..1175051 (+) 174 WP_088013656.1 hypothetical protein -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 88576.57 Da        Isoelectric Point: 4.9926

>NTDB_id=679305 MY490_RS05500 WP_248268325.1 1168540..1170891(+) (recJ) [Gottfriedia acidiceleris strain LH14]
MLKSKARWKPKLSNHQEEQLLSKELQISPLLAKLLVTRGFNTVDAASKFLYEDQMSFHDPFLLEGMDIAIDRVFQAIEEN
EKILIFGDYDADGVSSTSVLYLTLIELEAKVDYYIPNRFTEGYGPNKNAFKWANEQGYSLIITVDTGISAAEEVNFANEL
GMDVIITDHHEPPEELPNAIAIIHPKLSPSYPFKELAGVGVVFKFASALLGREPEEYLELVSIGTVADLVPLVDENRLIV
KKGVRQLKQTQREGLRALLEISGTTTDSITEETIGFAIGPRINAVGRLGDAKPAVDLVLENDRALAKKRAEQIEILNKER
QELVSRMTEEAIKQVNELDSSCSNKVIIVAKEGWNAGVVGIVASKLVDRFYKPVIVLSIDHEKGIAKGSARSIEGFSLFE
NLTKCKDILPHFGGHTLAAGMTLAIEDVELLRHRLNEYADQIMTDEDFIPLKEVDLKCQASEVSISFINELNMLAPFGMH
NPKPVLEINEVDALNIKQIGNEGAHLKVQLKDDVTFLDAVGFGFGHVANEIATGSKISCLGMASINEWNGKRKPQLMIHD
IKVNHWQLFDLRGQEPHRLTLPHTEEKFIFLHQSSNEYENLKTKYPISTFVAYEDILNLDLNIQNNYVILLDLPSSENVL
KEVFRKGLSERIYLIFNQEELHFFSPIPSRESFKKFYSILANTNPFDMNMYEVALCRKMGWKKEQVDFMTKVFFDLEFVT
IEDGKIRLLPQTEKKDLSLSNTYARKLASIELERLFLYSKCDELTTFFQNMKSHFSENGEALI

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=679305 MY490_RS05500 WP_248268325.1 1168540..1170891(+) (recJ) [Gottfriedia acidiceleris strain LH14]
ATGTTAAAATCAAAAGCACGTTGGAAACCGAAACTATCAAATCACCAAGAAGAGCAATTATTAAGTAAAGAATTACAGAT
TTCCCCTCTATTAGCTAAGCTACTTGTTACTCGTGGATTTAATACAGTAGATGCAGCAAGTAAGTTTTTATATGAAGATC
AAATGAGCTTTCATGACCCGTTTTTATTAGAGGGTATGGATATTGCAATTGACAGAGTATTTCAAGCGATTGAAGAAAAT
GAAAAAATATTAATTTTTGGCGATTATGATGCAGATGGAGTTAGCAGTACTTCAGTATTGTATTTAACATTAATCGAACT
AGAAGCAAAAGTAGATTATTATATACCAAATCGTTTTACTGAAGGGTATGGTCCAAATAAGAATGCATTTAAATGGGCGA
ACGAACAAGGTTATTCTTTAATCATTACTGTAGATACAGGTATTTCAGCAGCTGAGGAAGTTAATTTTGCAAATGAACTA
GGCATGGATGTAATTATTACCGATCATCATGAACCACCAGAAGAACTACCAAACGCTATTGCAATTATTCATCCAAAGCT
AAGTCCTAGCTATCCTTTTAAAGAATTAGCAGGTGTAGGAGTTGTGTTTAAATTCGCTTCCGCATTATTAGGTAGGGAGC
CTGAGGAATATTTGGAACTAGTTTCGATTGGGACGGTTGCTGATCTAGTACCTTTAGTTGATGAAAATCGTTTAATTGTA
AAAAAAGGTGTAAGGCAACTGAAGCAAACTCAGCGTGAAGGACTAAGAGCTCTTTTAGAAATTAGTGGAACTACAACAGA
TTCAATTACGGAAGAAACAATTGGATTTGCAATTGGTCCTAGAATTAACGCAGTTGGTAGACTGGGTGATGCTAAGCCTG
CAGTAGACTTAGTTTTGGAAAATGATAGAGCACTTGCTAAAAAAAGAGCAGAGCAAATTGAAATCCTAAATAAGGAACGA
CAAGAATTAGTTTCACGCATGACCGAAGAGGCAATTAAGCAAGTTAACGAACTTGATTCATCTTGTTCAAATAAAGTAAT
TATTGTCGCAAAAGAAGGCTGGAATGCAGGAGTAGTTGGAATCGTTGCTTCGAAATTAGTTGATCGCTTTTACAAACCAG
TAATTGTTCTAAGTATTGATCATGAAAAGGGAATAGCAAAAGGTTCAGCAAGAAGCATTGAAGGTTTTTCTTTATTTGAA
AACTTAACAAAATGTAAAGATATTTTACCTCATTTTGGAGGCCATACACTTGCTGCTGGTATGACGTTGGCAATTGAAGA
TGTCGAGCTATTAAGACATCGTTTAAATGAATATGCAGATCAAATTATGACAGATGAAGATTTTATCCCATTAAAAGAAG
TCGATTTAAAATGTCAGGCTAGTGAAGTTTCAATCTCATTCATTAATGAATTAAATATGCTGGCACCATTTGGTATGCAT
AATCCAAAACCTGTTTTAGAAATAAACGAGGTTGATGCTCTAAATATTAAACAAATCGGTAATGAAGGTGCACATCTTAA
AGTACAACTTAAAGATGACGTTACATTCCTTGATGCTGTAGGGTTTGGATTTGGACATGTTGCGAATGAAATTGCAACTG
GATCAAAAATATCCTGCTTAGGGATGGCTTCCATTAACGAATGGAATGGGAAACGAAAGCCACAGTTAATGATTCATGAT
ATTAAAGTAAATCATTGGCAGTTATTTGATTTAAGAGGTCAAGAGCCACATCGATTAACTTTACCTCATACCGAAGAAAA
ATTCATATTTTTACATCAATCATCAAATGAATATGAAAATTTAAAGACTAAATATCCTATTTCTACGTTTGTTGCATATG
AAGATATCCTAAACTTAGATCTTAATATACAAAATAACTATGTGATCTTACTTGATTTACCTAGTTCTGAAAATGTTTTA
AAAGAAGTTTTTCGAAAAGGATTATCAGAACGAATCTACTTAATTTTTAATCAAGAAGAATTACATTTCTTCTCACCAAT
CCCGAGTAGAGAAAGTTTTAAAAAATTTTATTCAATCTTAGCAAATACCAATCCATTTGACATGAACATGTATGAAGTGG
CATTATGTCGTAAGATGGGATGGAAAAAAGAACAAGTCGATTTTATGACAAAGGTGTTTTTTGATTTAGAATTTGTTACA
ATAGAGGATGGAAAAATTCGTTTGTTGCCACAAACTGAGAAGAAAGATCTCTCTTTATCTAATACGTATGCAAGAAAATT
AGCTAGTATTGAACTAGAACGTTTGTTTCTGTACTCAAAATGTGATGAATTAACTACATTTTTTCAAAATATGAAAAGTC
ATTTTTCCGAAAATGGGGAGGCACTTATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(316-438)

RecJ OB domain (RecJ_OB)

(454-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.239

100

0.496