Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | MU858_RS19195 | Genome accession | NZ_CP095874 |
| Coordinates | 3722390..3723169 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. PGP15 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3686552..3739577 | 3722390..3723169 | within | 0 |
Gene organization within MGE regions
Location: 3686552..3739577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MU858_RS19035 (MU858_19035) | - | 3687438..3687641 (-) | 204 | WP_048530469.1 | YlzJ-like family protein | - |
| MU858_RS19040 (MU858_19040) | tepA | 3687638..3688387 (-) | 750 | WP_048530471.1 | translocation-enhancing protein TepA | - |
| MU858_RS19045 (MU858_19045) | - | 3688490..3690160 (-) | 1671 | WP_247998489.1 | ribonuclease J | - |
| MU858_RS19050 (MU858_19050) | dapA | 3690847..3691725 (-) | 879 | WP_048530473.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| MU858_RS19055 (MU858_19055) | dapG | 3691737..3692969 (-) | 1233 | WP_048530475.1 | aspartate kinase | - |
| MU858_RS19060 (MU858_19060) | asd | 3692993..3694039 (-) | 1047 | WP_000414848.1 | aspartate-semialdehyde dehydrogenase | - |
| MU858_RS19065 (MU858_19065) | dpaB | 3694190..3694789 (-) | 600 | WP_001049480.1 | dipicolinate synthase subunit B | - |
| MU858_RS19070 (MU858_19070) | dpaA | 3694786..3695688 (-) | 903 | WP_071758792.1 | dipicolinic acid synthetase subunit A | - |
| MU858_RS19075 (MU858_19075) | - | 3695963..3696214 (-) | 252 | WP_001239747.1 | YlmC/YmxH family sporulation protein | - |
| MU858_RS19080 (MU858_19080) | - | 3696341..3697582 (-) | 1242 | WP_071758790.1 | pitrilysin family protein | - |
| MU858_RS19085 (MU858_19085) | - | 3697669..3698568 (-) | 900 | WP_071758789.1 | polysaccharide deacetylase family protein | - |
| MU858_RS19090 (MU858_19090) | pnp | 3698720..3700858 (-) | 2139 | WP_048530482.1 | polyribonucleotide nucleotidyltransferase | - |
| MU858_RS19095 (MU858_19095) | rpsO | 3701019..3701288 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| MU858_RS19100 (MU858_19100) | ribF | 3701389..3702360 (-) | 972 | WP_247998490.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| MU858_RS19105 (MU858_19105) | truB | 3702404..3703327 (-) | 924 | WP_247998491.1 | tRNA pseudouridine(55) synthase TruB | - |
| MU858_RS19110 (MU858_19110) | rbfA | 3703414..3703770 (-) | 357 | WP_000776444.1 | 30S ribosome-binding factor RbfA | - |
| MU858_RS19115 (MU858_19115) | - | 3703786..3704067 (-) | 282 | WP_071758788.1 | DUF503 family protein | - |
| MU858_RS19120 (MU858_19120) | infB | 3704064..3706124 (-) | 2061 | WP_048530488.1 | translation initiation factor IF-2 | - |
| MU858_RS19125 (MU858_19125) | - | 3706129..3706440 (-) | 312 | WP_001286518.1 | YlxQ family RNA-binding protein | - |
| MU858_RS19130 (MU858_19130) | - | 3706441..3706713 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| MU858_RS19135 (MU858_19135) | nusA | 3706725..3707831 (-) | 1107 | WP_000102596.1 | transcription termination factor NusA | - |
| MU858_RS19140 (MU858_19140) | rimP | 3707849..3708319 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| MU858_RS19145 (MU858_19145) | - | 3708652..3712953 (-) | 4302 | WP_071758787.1 | PolC-type DNA polymerase III | - |
| MU858_RS19150 (MU858_19150) | - | 3713078..3714778 (-) | 1701 | WP_247998492.1 | proline--tRNA ligase | - |
| MU858_RS19155 (MU858_19155) | rseP | 3714888..3716144 (-) | 1257 | WP_166688118.1 | RIP metalloprotease RseP | - |
| MU858_RS19160 (MU858_19160) | dxr | 3716161..3717303 (-) | 1143 | WP_016086609.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| MU858_RS19165 (MU858_19165) | cdsA | 3717327..3718118 (-) | 792 | WP_071758785.1 | phosphatidate cytidylyltransferase | - |
| MU858_RS19170 (MU858_19170) | uppS | 3718136..3718912 (-) | 777 | WP_048530497.1 | isoprenyl transferase | - |
| MU858_RS19175 (MU858_19175) | frr | 3718998..3719555 (-) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| MU858_RS19180 (MU858_19180) | pyrH | 3719558..3720280 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| MU858_RS19185 (MU858_19185) | tsf | 3720347..3721234 (-) | 888 | WP_002194822.1 | translation elongation factor Ts | - |
| MU858_RS19190 (MU858_19190) | rpsB | 3721338..3722039 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| MU858_RS19195 (MU858_19195) | codY | 3722390..3723169 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| MU858_RS19200 (MU858_19200) | hslU | 3723247..3724638 (-) | 1392 | WP_048530499.1 | ATP-dependent protease ATPase subunit HslU | - |
| MU858_RS19205 (MU858_19205) | hslV | 3724661..3725203 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| MU858_RS19210 (MU858_19210) | xerC | 3725247..3726146 (-) | 900 | WP_029439591.1 | tyrosine recombinase XerC | - |
| MU858_RS19215 (MU858_19215) | trmFO | 3726212..3727516 (-) | 1305 | WP_071716250.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| MU858_RS19220 (MU858_19220) | topA | 3727567..3729645 (-) | 2079 | WP_071758783.1 | type I DNA topoisomerase | - |
| MU858_RS19225 (MU858_19225) | dprA | 3729790..3730659 (-) | 870 | WP_048530504.1 | DNA-processing protein DprA | - |
| MU858_RS19230 (MU858_19230) | sucD | 3730747..3731649 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| MU858_RS19235 (MU858_19235) | sucC | 3731669..3732829 (-) | 1161 | WP_016086604.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| MU858_RS19240 (MU858_19240) | rnhB | 3733023..3733796 (-) | 774 | WP_048530506.1 | ribonuclease HII | - |
| MU858_RS19245 (MU858_19245) | ylqF | 3733848..3734738 (-) | 891 | WP_016135245.1 | ribosome biogenesis GTPase YlqF | - |
| MU858_RS19250 (MU858_19250) | lepB | 3734759..3735310 (-) | 552 | WP_048530509.1 | signal peptidase I | - |
| MU858_RS19255 (MU858_19255) | rplS | 3735414..3735758 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| MU858_RS19260 (MU858_19260) | trmD | 3735905..3736639 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| MU858_RS19265 (MU858_19265) | rimM | 3736639..3737154 (-) | 516 | WP_166688116.1 | ribosome maturation factor RimM | - |
| MU858_RS19270 (MU858_19270) | - | 3737275..3737502 (-) | 228 | WP_087958605.1 | KH domain-containing protein | - |
| MU858_RS19275 (MU858_19275) | rpsP | 3737517..3737789 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| MU858_RS19280 (MU858_19280) | ffh | 3737890..3739239 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=679008 MU858_RS19195 WP_000421288.1 3722390..3723169(-) (codY) [Bacillus sp. PGP15]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=679008 MU858_RS19195 WP_000421288.1 3722390..3723169(-) (codY) [Bacillus sp. PGP15]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACACGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACACTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATCGCTGACCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACACGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |