Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   MYA84_RS05900 Genome accession   NZ_CP095872
Coordinates   1174765..1175400 (+) Length   211 a.a.
NCBI ID   WP_004815587.1    Uniprot ID   N8WKT7
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169765..1180400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS05865 (MYA84_05845) kdsB 1169909..1170670 (+) 762 WP_004815572.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MYA84_RS05870 (MYA84_05850) - 1170685..1171668 (+) 984 WP_004815574.1 hypothetical protein -
  MYA84_RS05875 (MYA84_05855) - 1171686..1172027 (+) 342 WP_004815576.1 PilZ domain-containing protein -
  MYA84_RS05880 (MYA84_05860) - 1172055..1172828 (+) 774 WP_184103838.1 TatD family hydrolase -
  MYA84_RS05885 (MYA84_05865) - 1172869..1173483 (+) 615 WP_271259782.1 TetR/AcrR family transcriptional regulator -
  MYA84_RS05890 (MYA84_05870) - 1173493..1174050 (+) 558 WP_004815582.1 type II secretion system protein -
  MYA84_RS05895 (MYA84_05875) gspI 1174220..1174768 (+) 549 WP_228127337.1 type II secretion system minor pseudopilin GspI -
  MYA84_RS05900 (MYA84_05880) xcpW 1174765..1175400 (+) 636 WP_004815587.1 type II secretion system protein GspJ Machinery gene
  MYA84_RS05905 (MYA84_05885) gspK 1175410..1176357 (+) 948 WP_004815588.1 type II secretion system minor pseudopilin GspK -
  MYA84_RS05910 (MYA84_05890) - 1176505..1177101 (+) 597 WP_004815591.1 6-pyruvoyl trahydropterin synthase family protein -
  MYA84_RS05915 (MYA84_05895) ung 1177147..1177863 (+) 717 WP_004815592.1 uracil-DNA glycosylase -
  MYA84_RS05920 (MYA84_05900) - 1177860..1178984 (+) 1125 WP_004815595.1 enoyl-CoA hydratase/isomerase family protein -
  MYA84_RS05925 (MYA84_05905) tadA 1178988..1179509 (+) 522 WP_184103836.1 tRNA adenosine(34) deaminase TadA -
  MYA84_RS05930 (MYA84_05910) - 1179561..1179992 (+) 432 WP_004815598.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24088.20 Da        Isoelectric Point: 4.8547

>NTDB_id=678950 MYA84_RS05900 WP_004815587.1 1174765..1175400(+) (xcpW) [Acinetobacter schindleri strain H4-3-C1]
MKKNGFTLVELLVAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDMVQTVPLTANVNGDIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKFRNLNQTGRDQPESSILLSDVEQFQITALNPNEITQWPE
SGLDLNRTENKQLLPKGIKINLIVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=678950 MYA84_RS05900 WP_004815587.1 1174765..1175400(+) (xcpW) [Acinetobacter schindleri strain H4-3-C1]
ATGAAAAAAAATGGATTTACCCTGGTCGAGCTTCTGGTTGCGATTGCGATCTTTGCCGTATTGTCTGCATTAGGATGGCA
GGTCTTTGATCATATCCGGGTCACGCGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATATGGTGCAAACAGTACCCTTAACCGCAAATGTAAATGGTGATATTCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCGCTGGAACAAGGCATCGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAATTCAGGAACCTGAACCAGACCGGACGCGATCAACCTG
AATCGAGCATATTGCTGAGTGATGTAGAGCAGTTTCAAATTACTGCACTGAATCCAAATGAAATCACACAATGGCCGGAA
AGTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGATTGTACAGGGTGT
GCAATATGAATGGTTGTTCAGTCTGCTGAACACAGATTATCTGTCAAATAATACCAATAATATAGGCAGCTCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WKT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

56.701

91.943

0.521