Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MYE78_RS08155 Genome accession   NZ_CP095842
Coordinates   1615023..1615802 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain EM-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610023..1620802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYE78_RS08135 trmFO 1610710..1612017 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MYE78_RS08140 xerC 1612087..1613004 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MYE78_RS08145 hslV 1613020..1613565 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  MYE78_RS08150 hslU 1613582..1614985 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  MYE78_RS08155 codY 1615023..1615802 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MYE78_RS08160 flgB 1616156..1616545 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MYE78_RS08165 flgC 1616545..1616997 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  MYE78_RS08170 fliE 1617008..1617328 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  MYE78_RS08175 fliF 1617371..1618981 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  MYE78_RS08180 fliG 1618994..1620010 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MYE78_RS08185 fliH 1620003..1620758 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=678741 MYE78_RS08155 WP_003154263.1 1615023..1615802(+) (codY) [Bacillus velezensis strain EM-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=678741 MYE78_RS08155 WP_003154263.1 1615023..1615802(+) (codY) [Bacillus velezensis strain EM-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471