Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG741_RS14790 Genome accession   NZ_CP109530
Coordinates   3245119..3247326 (-) Length   735 a.a.
NCBI ID   WP_405597878.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3240119..3252326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS14770 (OG741_14760) - 3241675..3242376 (+) 702 WP_405605562.1 TetR family transcriptional regulator -
  OG741_RS14775 (OG741_14765) - 3242486..3242797 (+) 312 WP_405597875.1 heavy-metal-associated domain-containing protein -
  OG741_RS14780 (OG741_14770) - 3242816..3243172 (+) 357 Protein_2928 heavy metal translocating P-type ATPase -
  OG741_RS14785 (OG741_14775) - 3243600..3244889 (-) 1290 WP_324978645.1 citrate synthase -
  OG741_RS14790 (OG741_14780) recD/recD2/recDB 3245119..3247326 (-) 2208 WP_405597878.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG741_RS14795 (OG741_14785) - 3248231..3249028 (-) 798 WP_405605564.1 sugar phosphate isomerase/epimerase family protein -
  OG741_RS14800 (OG741_14790) - 3249061..3250200 (-) 1140 WP_405597880.1 dihydrodipicolinate synthase family protein -
  OG741_RS14805 (OG741_14795) - 3250197..3251348 (-) 1152 WP_405597882.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79238.69 Da        Isoelectric Point: 6.5801

>NTDB_id=678322 OG741_RS14790 WP_405597878.1 3245119..3247326(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01410]
MSNLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPKIAERIVDHFGVDTLDIIEQEPKKLIEVPGLGPKRTKLIGAAWEEQKAIKEVMIFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIECLAELAGDEEGVVREQVPAPDGGEALTAVYLVPFHRAEISLAAQLKRLLRTAEDRMAAFHDVA
WDKALAWLAERTGAELATEQEQAVRLALTSKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGA
DASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAD
GGPVPSVRLTRIFRQAQQSGVVTNAHRINSGVQPITSGLSDFFLFVEEETEDAGRVTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQLDDQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTVS
AGRRFTALDHRLTGG

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=678322 OG741_RS14790 WP_405597878.1 3245119..3247326(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01410]
ATGTCCAATCTGGCAGTGCTCGAAGGGGTCCTCGAGCGGATCACGTACGCCAATGAGGAGAACGGCTACACGGTCGCCCG
CGTCGACACCGGCCGCGGCGGCGGTGATCTCCTCACGGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCCCTGC
GTATGGAGGGCCGCTGGGGCTCCCATCCCCAGTACGGCAAGCAGTTCACGGTCGAGAACTACACCACCGTCCTCCCGGCC
ACCATCCAGGGCATACGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGAAAATCGCCGAGCGCATCGTCGA
TCACTTCGGTGTCGACACCCTCGACATCATCGAGCAGGAGCCGAAGAAGCTCATCGAGGTCCCCGGACTCGGCCCGAAGC
GGACGAAGTTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGATCTTCCTTCAGGGCGTCGGCGTC
TCGACCTCCATCGCGGTGCGTATCTACAAGAAGTACGAGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCGTACCGCCT
GGCCGCCGACGTATGGGGCATCGGCTTCCTCACGGCCGACAGGATCGCGCAGGCGGTCGGCATTCCGCACGACAGCCCTG
AGCGGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCAGCTG
ATCGCGGACGCGGTGAAGCTGCTCCAGGTGGACACCGGCCTTGTCATCGAGTGTCTCGCCGAACTCGCGGGCGACGAGGA
GGGGGTCGTCCGGGAGCAGGTCCCGGCCCCCGACGGCGGCGAGGCGCTGACCGCGGTCTATCTCGTCCCCTTCCACCGCG
CCGAAATCTCGCTCGCGGCTCAGCTGAAGCGTCTGCTGCGTACCGCCGAGGACCGGATGGCGGCTTTCCATGACGTCGCG
TGGGACAAGGCGCTGGCCTGGCTGGCCGAGCGGACGGGCGCCGAGCTGGCGACCGAGCAGGAGCAGGCGGTCCGTCTCGC
GCTCACCAGCAAGGTGGCCGTCCTCACCGGAGGCCCGGGCTGCGGCAAGTCGTTCACGGTCCGCTCCATCGTGGAGCTGG
CCCGCGCCAAGAAGGCCAAGGTCGTGCTCGCGGCCCCGACAGGGCGCGCGGCCAAGCGTCTGGCCGAGCTCACCGGAGCC
GACGCCTCCACCGTGCACCGGCTGCTTGAGCTCAAGCCGGGCGGGGACGCGGCGTACGACCGGGACCGGCCCCTGGACGC
GGACCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTAGCCCCCGGCG
CGCATCTGCTGCTGGTGGGGGACGTCGACCAGCTGCCGAGCGTCGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGCGGAC
GGCGGCCCGGTGCCCAGCGTCCGCCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCAGGTGTCGTCACCAATGCCCATCG
CATCAATTCCGGTGTCCAGCCCATCACTTCGGGGCTCTCGGACTTCTTTCTCTTCGTGGAGGAGGAGACGGAGGACGCGG
GCAGGGTCACCGTCGATGTGGCCGCCCGCCGGATTCCTGCCAAGTTCGGCCTCGACCCACGGCGCGATGTGCAGGTCCTC
GCGCCGATGCACCGCGGCCCGGCCGGCGCCGGCACGCTCAACGGGCTGCTTCAGCAGGCGATTACCCCCGCGCGGCCGGA
CCTCCCGGAGAAGCGCTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGG
GCAAGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAACTGGACGATCAGCGGCTGACGGTGCTGACG
GACGAGGACGAGGAGGTTCCGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCCTACGCCGTGACCATTCACCGCTC
GCAGGGCAGTGAATACCCCGCGGTGGTGATCCCTGTCACCACAGGAGCGTGGATGATGCTGCAGCGGAACCTCCTGTACA
CCGCGGTCACCCGGGCGAGGAAACTCGTCGTGCTGGTCGGCTCCCGTAAAGCGATAGGACAGGCAGTGCGCACCGTTTCC
GCAGGCAGACGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGTTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

AAA domain (AAA_30)

(336-513)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-138)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.864

100

0.373