Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MYW48_RS19850 Genome accession   NZ_CP095767
Coordinates   3943450..3944229 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain CDHWZ7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3938450..3949229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW48_RS19825 (MYW48_19825) uppS 3939198..3939974 (-) 777 WP_000971296.1 isoprenyl transferase -
  MYW48_RS19830 (MYW48_19830) frr 3940060..3940617 (-) 558 WP_000531505.1 ribosome recycling factor -
  MYW48_RS19835 (MYW48_19835) pyrH 3940620..3941342 (-) 723 WP_000042669.1 UMP kinase -
  MYW48_RS19840 (MYW48_19840) tsf 3941409..3942296 (-) 888 WP_001018576.1 translation elongation factor Ts -
  MYW48_RS19845 (MYW48_19845) rpsB 3942400..3943101 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  MYW48_RS19850 (MYW48_19850) codY 3943450..3944229 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MYW48_RS19855 (MYW48_19855) hslU 3944307..3945698 (-) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  MYW48_RS19860 (MYW48_19860) hslV 3945721..3946263 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  MYW48_RS19865 (MYW48_19865) xerC 3946306..3947205 (-) 900 WP_001101244.1 tyrosine recombinase XerC -
  MYW48_RS19870 (MYW48_19870) trmFO 3947271..3948575 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=678303 MYW48_RS19850 WP_000421290.1 3943450..3944229(-) (codY) [Bacillus cereus strain CDHWZ7]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=678303 MYW48_RS19850 WP_000421290.1 3943450..3944229(-) (codY) [Bacillus cereus strain CDHWZ7]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAACTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459