Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MXH98_RS08140 Genome accession   NZ_CP095760
Coordinates   1600240..1601019 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ZK-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595240..1606019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXH98_RS08120 (MXH98_08120) trmFO 1595927..1597234 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MXH98_RS08125 (MXH98_08125) xerC 1597304..1598221 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  MXH98_RS08130 (MXH98_08130) hslV 1598237..1598782 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  MXH98_RS08135 (MXH98_08135) hslU 1598790..1600202 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  MXH98_RS08140 (MXH98_08140) codY 1600240..1601019 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MXH98_RS08145 (MXH98_08145) flgB 1601373..1601762 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  MXH98_RS08150 (MXH98_08150) flgC 1601762..1602214 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  MXH98_RS08155 (MXH98_08155) fliE 1602225..1602545 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  MXH98_RS08160 (MXH98_08160) fliF 1602588..1604198 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  MXH98_RS08165 (MXH98_08165) fliG 1604211..1605227 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  MXH98_RS08170 (MXH98_08170) fliH 1605220..1605975 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=678166 MXH98_RS08140 WP_003154263.1 1600240..1601019(+) (codY) [Bacillus velezensis strain ZK-3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=678166 MXH98_RS08140 WP_003154263.1 1600240..1601019(+) (codY) [Bacillus velezensis strain ZK-3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471