Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG428_RS11870 Genome accession   NZ_CP109508
Coordinates   2587902..2590133 (-) Length   743 a.a.
NCBI ID   WP_124277190.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01422     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2582902..2595133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG428_RS11855 (OG428_11860) - 2582946..2583251 (+) 306 WP_124276412.1 heavy-metal-associated domain-containing protein -
  OG428_RS11860 (OG428_11865) - 2583409..2585868 (+) 2460 WP_329042768.1 heavy metal translocating P-type ATPase -
  OG428_RS11865 (OG428_11870) - 2586406..2587704 (-) 1299 WP_073746777.1 citrate synthase -
  OG428_RS11870 (OG428_11875) recD/recD2/recDB 2587902..2590133 (-) 2232 WP_124277190.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG428_RS11875 (OG428_11880) - 2590305..2590640 (+) 336 WP_124276410.1 hypothetical protein -
  OG428_RS11880 (OG428_11885) - 2590679..2591416 (+) 738 WP_329042770.1 class I SAM-dependent methyltransferase -
  OG428_RS11885 (OG428_11890) - 2591549..2592160 (+) 612 WP_329042772.1 ATP-binding protein -
  OG428_RS11890 (OG428_11895) - 2592176..2592547 (+) 372 WP_319353118.1 hypothetical protein -
  OG428_RS11895 (OG428_11900) - 2592635..2593018 (+) 384 WP_124276406.1 VOC family protein -
  OG428_RS11900 (OG428_11905) - 2593198..2594499 (-) 1302 WP_329042775.1 hydrogenase expression protein HypA -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80082.76 Da        Isoelectric Point: 6.2679

>NTDB_id=678097 OG428_RS11870 WP_124277190.1 2587902..2590133(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01422]
MPNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQFGKQFTVENYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGNCFLPEERL
IADGVKLLQVDTGLVIDCLAELAEDPEGVVREKVPGPEDGQPVTAVYLVPFHRAELSLAAQVRRLLRAPEDRMPAFGDVD
WDKALTWLAGRTGATLAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLIKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTGLDADEQRLTVLT
DEDEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGVPEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=678097 OG428_RS11870 WP_124277190.1 2587902..2590133(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01422]
ATGCCGAACATGGCTGTCCTCGAAGGCGTCCTGGAGCGGATCACGTACGCCAACGAGGAGAACGGGTACACGGTCGCGCG
CGTCGACACCGGGCGCGGTGCGGGCGACCTGCTGACCGTCGTCGGGTCGCTGCTCGGGGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGGCTCCCACCCGCAGTTCGGCAAGCAGTTCACCGTCGAGAACTACACCACGATCCTTCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGGCCCGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGGCTCGTCGAGGTGCCCGGGCTCGGGCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGAGTGTCGGGGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGTCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCAACTGCTTCCTCCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTGCAGGTCGACACCGGGCTGGTCATCGACTGCCTGGCCGAGCTCGCCGAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGGCAGCCGGTGACCGCCGTCTACCTGGTCCCCTTCCACCGCG
CCGAGCTCTCCCTCGCCGCCCAGGTCAGGCGCCTGCTGCGGGCGCCGGAGGACCGGATGCCGGCCTTCGGGGACGTCGAC
TGGGACAAGGCGCTGACCTGGCTCGCCGGACGTACGGGGGCGACCCTGGCACCCGAGCAGGAGGCGGCCGTCCGGCTCGC
CCTCACCGAGAAGGTCGCCGTGCTGACGGGCGGCCCCGGCTGCGGAAAGTCGTTCACCGTCCGCTCCGTCGTCGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTGCTGGCCGCCCCCACCGGGCGGGCCGCGAAGCGCCTCTCGGAGCTGACCGGCGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCCGGCGGGGACGCGGCGTACGACCGCGACCGTCCGCTGGACGC
CGACCTGGTCGTCGTGGACGAGGCCTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCATCAAGGCCGTGGCACCCGGTG
CCCACCTCCTGCTGGTCGGCGATGTCGACCAGCTGCCGTCGGTCGGCGCAGGGGAGGTGCTGAGGGACCTGCTCGCCGAG
GGCGGCCCGGTCCCGGCGGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCGGGCGTCGTCACCAACGCCCACCG
GATCAACTCCGGGGTGCCGCCGCTGACCCAGGGCCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTCCTCGCCGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGCCTGAACCCCCGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGTGGCCCGGCAGGCGCGGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGG
CCTGCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACGCAAATTCGGAACAACTATGACAAAG
GGGAGAACGGGGTATTCAACGGTACGGTCGGGGTCGTCACCGGCCTCGACGCGGACGAGCAGCGGCTGACGGTTCTCACG
GACGAGGACGAGGAGATCGCGTACGACTTCGACGAACTGGACGAGCTCGCCCATGCCTACGCGATGACCATCCACCGCTC
GCAGGGCAGCGAATACCCGGCGGTCGTCATCCCGGTGACCACCAGCGCCTGGATGATGCTGCAACGGAACCTGCTGTACA
CGGCGGTGACGCGGGCCAAGAAGCTGGTCGTGCTGGTCGGTTCGCGCAAGGCCATCGGTCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGCTGCACGGCACTGGATTTCCGGCTGCGTGGCGGGGTGCCCGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(335-514)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.111

100

0.363