Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   L8T27_RS13995 Genome accession   NZ_CP095743
Coordinates   2755127..2757490 (-) Length   787 a.a.
NCBI ID   WP_233313033.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2750127..2762490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS13980 (L8T27_013985) dtd 2751691..2752131 (-) 441 WP_237941744.1 D-aminoacyl-tRNA deacylase -
  L8T27_RS13985 (L8T27_013990) - 2752143..2754338 (-) 2196 WP_233313035.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L8T27_RS13990 (L8T27_013995) - 2754624..2755136 (-) 513 WP_233313034.1 adenine phosphoribosyltransferase -
  L8T27_RS13995 (L8T27_014000) recJ 2755127..2757490 (-) 2364 WP_233313033.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  L8T27_RS14000 (L8T27_014005) - 2757623..2757946 (-) 324 WP_237941745.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  L8T27_RS14005 (L8T27_014010) secDF 2758051..2760297 (-) 2247 WP_237941746.1 protein translocase subunit SecDF -
  L8T27_RS14010 (L8T27_014015) - 2760548..2760847 (-) 300 WP_233313030.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88020.56 Da        Isoelectric Point: 4.8400

>NTDB_id=678047 L8T27_RS13995 WP_233313033.1 2755127..2757490(-) (recJ) [Niallia sp. Man26]
MLHPKSRWITEKKNNDNAAILADQLKITPLVASLLVNRGYDSLEKAKAFLYSIDEFHDPFLMKGMDIAVNRIKHAIDKQE
PILIFGDYDADGVTSTTVMMKTLEDLGADVQFYIPNRFTEGYGPNEGAFRYAASIGIKLIVTVDTGIAAVKEADVAKELG
IDYIVTDHHEPGLVLPDALAIIHPRLDGSEYPFHELAGVGVALKVAHALYGELPEHLLQFAAIGTIADLVSLTGENRIIA
KLGIKKLKQTANIGLQALLKQMKTEASGIDEETIGFMIAPRINAVGRLDSADPAVELLLTDDPDLAASLAEEMEAINKER
QAIVNQITEEAIEQVETLYPLAENRVIIVGKEGWNPGVVGIVASRLVEKFYRPTIVLGFDQEKGIAKGSARSIAGFDLYQ
NLSTCREILPHFGGHPMAAGMTLALEDVDQLRQRLNQLAFDKLVPEDLVPLTAVDMEIDLKDAHLQAIEEMQLLAPFGVD
NAKPRIVMDSVEISTIRKIGANQNHLKVQFQQEDTSLDGIGFGIGELYDHISPSAKVSVLGQLSINEWNNIKKPQIFIQD
IAVKHWQLFDYRGIRNLEKLASAIPGNSATWIFFHKDSATPEALNSISDYKIIENLDDAASFQTENRILVLADFPHSKDI
VQQLLASTAPERIYASFFKQDSDFFSTMPTRDHFKWYYAFLAKQNGFDLKKYGGELAKRQGWSKETIVFMSKVFFELNFV
TMKDGFITLNKNSNRRDLTESPSFQQKQAQFSLENELIYSSYEQLKNWFDLILQKSVKNEEEVQEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=678047 L8T27_RS13995 WP_233313033.1 2755127..2757490(-) (recJ) [Niallia sp. Man26]
ATGCTTCATCCTAAATCTAGATGGATTACAGAAAAGAAAAATAATGATAATGCTGCAATACTTGCAGACCAGTTAAAAAT
CACACCTCTTGTAGCAAGTTTACTCGTAAACAGAGGGTATGATAGCCTTGAAAAGGCAAAAGCATTTTTATACAGCATAG
ATGAGTTTCATGACCCATTTTTAATGAAGGGCATGGATATAGCAGTAAACCGCATAAAGCATGCCATCGATAAACAAGAG
CCAATCCTTATATTTGGCGACTATGACGCAGATGGTGTAACAAGCACCACTGTTATGATGAAAACATTGGAGGATCTAGG
CGCCGATGTTCAATTTTATATACCCAATCGTTTTACAGAAGGCTATGGACCGAATGAAGGGGCATTTCGATATGCAGCAA
GCATCGGCATTAAGCTGATTGTTACAGTGGATACGGGAATAGCTGCTGTCAAGGAAGCAGATGTGGCGAAAGAGCTAGGG
ATAGACTATATCGTGACAGACCACCATGAGCCTGGATTAGTTCTTCCAGATGCGCTAGCAATCATTCATCCAAGATTGGA
TGGGAGCGAGTATCCTTTCCATGAGCTTGCCGGAGTCGGTGTTGCTTTAAAAGTTGCGCATGCGCTATACGGCGAACTCC
CAGAGCATCTTCTGCAATTTGCTGCAATTGGGACAATTGCCGACCTTGTATCACTGACAGGGGAAAACCGGATTATCGCC
AAACTTGGAATCAAGAAGTTGAAGCAGACTGCTAACATCGGCTTGCAGGCATTACTGAAGCAGATGAAGACAGAAGCAAG
CGGGATAGATGAGGAAACAATCGGATTTATGATTGCCCCTAGGATAAATGCTGTTGGCCGGCTCGACAGTGCTGACCCTG
CCGTTGAACTGCTCTTAACAGATGACCCAGACCTTGCTGCATCTCTTGCAGAAGAGATGGAAGCGATAAATAAAGAACGG
CAGGCAATCGTTAACCAAATTACGGAGGAAGCGATTGAACAAGTTGAGACGCTGTATCCGTTGGCCGAAAACCGGGTGAT
TATCGTCGGTAAAGAGGGATGGAATCCGGGAGTAGTCGGTATTGTGGCTTCAAGGCTAGTCGAGAAATTTTACAGACCTA
CCATTGTTCTCGGCTTTGATCAGGAAAAAGGTATTGCAAAGGGGTCGGCACGCAGTATTGCCGGATTTGATTTATACCAG
AATCTGTCTACATGCAGAGAGATACTTCCCCATTTCGGCGGACATCCGATGGCAGCAGGGATGACACTTGCATTGGAGGA
TGTGGATCAGCTTCGTCAGCGCTTGAACCAACTCGCTTTTGACAAGCTTGTTCCTGAAGATTTAGTTCCATTAACAGCCG
TTGATATGGAGATTGACCTTAAAGATGCGCATTTACAAGCCATTGAGGAAATGCAGCTGCTTGCGCCATTTGGTGTCGAT
AATGCTAAGCCGCGGATTGTGATGGATTCTGTTGAGATAAGCACTATAAGGAAGATTGGAGCTAACCAGAATCATTTGAA
GGTGCAATTTCAGCAGGAAGACACAAGCCTTGATGGAATTGGGTTTGGGATTGGCGAGCTTTATGACCATATATCGCCAA
GTGCAAAGGTGTCTGTACTAGGACAGCTTTCTATCAATGAATGGAATAATATAAAAAAGCCGCAAATATTTATTCAGGAT
ATTGCTGTAAAGCATTGGCAGCTTTTCGATTACCGAGGTATTAGAAATTTGGAGAAGCTCGCATCTGCCATACCAGGGAA
CAGTGCAACATGGATTTTCTTTCACAAGGATTCGGCAACACCTGAGGCTCTTAATTCTATTTCTGATTATAAAATTATTG
AAAATCTTGATGATGCAGCATCCTTCCAAACCGAAAATCGCATACTAGTACTGGCAGACTTTCCGCATAGCAAAGATATC
GTTCAACAATTGTTAGCTAGTACTGCCCCTGAACGAATATATGCAAGCTTTTTTAAGCAGGACAGCGACTTTTTCAGCAC
GATGCCGACAAGGGATCACTTTAAATGGTACTACGCTTTTCTTGCAAAGCAAAATGGCTTTGACCTTAAAAAGTATGGCG
GAGAGCTTGCGAAACGCCAAGGCTGGAGCAAAGAAACAATTGTTTTTATGTCAAAGGTGTTTTTTGAGCTGAATTTTGTT
ACAATGAAGGATGGGTTTATTACGCTGAATAAGAATAGCAATAGAAGAGATTTAACAGAGTCTCCTTCTTTCCAACAGAA
ACAAGCACAATTTTCGCTCGAAAATGAATTAATATACTCGTCTTATGAGCAGTTAAAGAATTGGTTTGATCTTATTCTTC
AGAAATCCGTTAAGAATGAGGAGGAAGTGCAAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(454-560)

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(314-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.411

98.729

0.527