Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   L8T27_RS13885 Genome accession   NZ_CP095743
Coordinates   2730580..2732994 (-) Length   804 a.a.
NCBI ID   WP_237941735.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2725580..2737994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS13865 (L8T27_013870) - 2725646..2725912 (-) 267 WP_127737353.1 IreB family regulatory phosphoprotein -
  L8T27_RS13870 (L8T27_013875) alaS 2725983..2728616 (-) 2634 WP_233313058.1 alanine--tRNA ligase -
  L8T27_RS13875 (L8T27_013880) - 2728994..2730061 (-) 1068 WP_233313057.1 AI-2E family transporter -
  L8T27_RS13880 (L8T27_013885) - 2730146..2730334 (-) 189 WP_233313056.1 hypothetical protein -
  L8T27_RS13885 (L8T27_013890) recD2 2730580..2732994 (-) 2415 WP_237941735.1 ATP-dependent RecD-like DNA helicase Machinery gene
  L8T27_RS13890 (L8T27_013895) - 2733033..2733680 (-) 648 WP_237941736.1 tetratricopeptide repeat protein -
  L8T27_RS13895 (L8T27_013900) mnmA 2733826..2734941 (-) 1116 WP_233313053.1 tRNA 2-thiouridine(34) synthase MnmA -
  L8T27_RS13900 (L8T27_013905) - 2735000..2736154 (-) 1155 WP_233313052.1 cysteine desulfurase family protein -
  L8T27_RS13905 (L8T27_013910) - 2736244..2736663 (-) 420 WP_233313051.1 Rrf2 family transcriptional regulator -
  L8T27_RS13910 (L8T27_013915) - 2736660..2737346 (-) 687 WP_237941737.1 YitT family protein -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90570.23 Da        Isoelectric Point: 4.5853

>NTDB_id=678046 L8T27_RS13885 WP_237941735.1 2730580..2732994(-) (recD2) [Niallia sp. Man26]
MEEQNSLDLFEEQGKYVKGRHLVTIFHNEDNLYTVLRIRVDETNDSYEDKEAVVTGYLPKMHENDTYTFFGEFKDHPRFG
LQFQVSSFRKEMPQTKQGVITYLSSELFKGIGQKTAENIVDTLGENAISKILNEPSLLDTVPKLPPDKAKLLYDTLMQNQ
GLEQAMISLNQYGFGPQLSMKIYQTYKENTLEVIQSNPYKLVEDVEGIGFGKADDLGFQIGLIGSHPDRIKAGCLYVLEL
GSSQEGHVYLEAEYVLNRVKDLLEENKQEQVDFSAIADQIVLLQEEKKIIVEDKKIFLPSLYYSEKGLVRHIKRVMEQQE
YEDQFPESEFLLALGNLEDRLGVQYAPSQREAIQTALMAPMLMLTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKEE
PFPFILAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSGGFDKDEENPLEGKIIIVDETSMVDIWLAFQLFKALPANIQVI
LVGDEDQLPSVGPGQVLKDLLASSCIPTVRLSDIYRQSEGSSIIELAHEIKDGRLPSNLTQQQTDRSFIKCASGQIAQAI
EKVVLNAKKKGYAPMDIQVLAPMYRGPAGIDRLNVILQEILNPNPDGTRKELKFGDVKYRIGDKVLQLVNQPENNVYNGD
MGEIVSIFYAKENTEKQDMVIVSFDGIEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGIT
RSKQFLILLGEVDAMEIGVGRNDELNRQTSLQEKLKEVFSQSDADIEAAEEDVSLFYSDRIMEIDPLIGMENVTPYDFMP
AQES

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=678046 L8T27_RS13885 WP_237941735.1 2730580..2732994(-) (recD2) [Niallia sp. Man26]
TTGGAAGAGCAAAATTCACTGGATCTTTTCGAGGAGCAGGGTAAGTATGTGAAGGGGCGCCATCTTGTCACGATATTTCA
CAACGAAGATAATCTTTATACCGTGCTCAGGATAAGGGTAGATGAAACGAATGACAGCTATGAAGATAAGGAAGCCGTTG
TCACAGGATATTTGCCGAAGATGCATGAAAATGATACATATACATTCTTTGGTGAATTTAAAGACCATCCCCGCTTTGGA
CTCCAATTCCAGGTCTCCTCTTTCCGAAAAGAGATGCCGCAGACAAAACAAGGGGTTATCACCTATCTGTCTAGTGAGCT
ATTTAAAGGAATCGGCCAGAAAACAGCAGAGAACATCGTGGACACTTTAGGGGAAAATGCCATCTCTAAAATTTTGAATG
AACCATCTTTGCTTGATACTGTTCCCAAACTTCCTCCAGACAAGGCGAAGCTTCTTTATGATACGCTCATGCAGAATCAA
GGGCTGGAGCAGGCGATGATATCGTTGAATCAGTATGGTTTCGGGCCGCAGCTATCCATGAAAATTTACCAGACTTATAA
GGAAAACACATTGGAGGTTATCCAGTCCAACCCTTATAAGCTTGTAGAGGATGTAGAAGGAATCGGTTTTGGTAAAGCAG
ATGACTTAGGCTTTCAGATTGGCCTGATTGGCAGCCATCCTGACAGAATTAAAGCAGGCTGCCTCTATGTGCTCGAGCTT
GGCAGCAGCCAGGAGGGACATGTCTACCTGGAAGCAGAATATGTGCTGAACAGAGTAAAGGATCTTCTCGAGGAAAATAA
ACAGGAGCAAGTAGACTTTTCAGCTATTGCAGACCAGATTGTCTTGCTTCAGGAAGAAAAGAAAATCATCGTCGAAGATA
AGAAGATTTTCCTGCCTTCCCTTTATTACTCAGAAAAAGGCCTTGTCCGGCATATTAAAAGAGTGATGGAACAGCAGGAA
TACGAAGATCAGTTTCCAGAATCGGAATTTTTGCTTGCACTCGGAAATTTGGAAGACAGGCTTGGAGTTCAATATGCACC
ATCACAAAGGGAAGCCATCCAAACAGCACTGATGGCGCCGATGCTTATGCTGACAGGCGGACCGGGGACAGGAAAAACCA
CGGTTATAAAAGGGATTGTAGAGCTTTATGGTGAACTGCATGGCTGCAGCCTTGATCCGAAGGATTACAAAAAGGAAGAA
CCTTTTCCTTTTATTTTAGCGGCTCCCACAGGAAGAGCGGCTAAAAGGATGACAGAATCGACTGGTTTACCTGCTGTCAC
CATTCATCGTCTGTTAGGCTGGAACGGAAGCGGCGGTTTTGACAAGGACGAGGAGAATCCTCTTGAAGGAAAAATCATTA
TTGTTGATGAAACCTCCATGGTTGATATTTGGCTAGCTTTTCAGCTGTTTAAAGCATTGCCAGCCAATATTCAAGTCATT
CTTGTCGGAGATGAAGACCAGCTTCCGTCTGTTGGACCAGGCCAGGTGCTGAAGGATTTGCTGGCATCAAGCTGCATTCC
GACAGTCCGGCTTTCTGATATTTACAGGCAGAGTGAAGGTTCTTCTATCATTGAACTTGCTCATGAGATAAAGGACGGCA
GATTGCCAAGTAATTTAACTCAGCAGCAAACAGACAGGTCCTTCATTAAATGTGCCTCTGGACAAATAGCACAGGCTATT
GAGAAGGTTGTCCTCAACGCGAAGAAAAAGGGCTATGCGCCAATGGATATTCAAGTTCTGGCACCGATGTACAGAGGCCC
TGCAGGAATAGACCGGCTCAATGTCATTCTCCAGGAAATATTGAACCCAAATCCAGATGGAACACGTAAGGAATTGAAGT
TCGGCGATGTTAAATACCGAATTGGCGATAAGGTGCTGCAACTCGTTAATCAGCCAGAAAACAATGTCTATAATGGAGAT
ATGGGAGAAATTGTATCCATCTTTTATGCAAAGGAAAATACAGAAAAACAAGACATGGTTATTGTCTCCTTCGATGGAAT
TGAAGCAACTTATACTAGGCAGGATTTAAATCAAATTACCCATGCTTATTGCTGTTCTGTTCATAAGTCCCAAGGTAGTG
AATTTCCAATTGTTATTATGCCGATTGTAAAAAGCTACTATAGGATGCTGCGGAGAAACTTAATATATACCGGCATTACA
AGAAGTAAACAATTTTTAATATTGCTTGGCGAAGTGGATGCGATGGAAATAGGGGTAGGCCGAAATGATGAGCTGAACCG
CCAAACTTCCCTGCAGGAAAAGCTGAAAGAAGTCTTTTCGCAAAGTGATGCAGATATCGAGGCAGCAGAAGAAGATGTTT
CCTTGTTTTACAGTGATCGGATAATGGAAATTGATCCGCTTATCGGAATGGAGAATGTTACTCCATATGATTTTATGCCA
GCTCAAGAAAGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-728)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.658

98.259

0.616