Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG406_RS25660 Genome accession   NZ_CP109499
Coordinates   5914562..5916817 (+) Length   751 a.a.
NCBI ID   WP_329187977.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5909562..5921817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG406_RS25645 (OG406_25640) - 5909810..5911762 (-) 1953 WP_329187975.1 substrate-binding domain-containing protein -
  OG406_RS25650 (OG406_25645) - 5911752..5913302 (-) 1551 WP_329190968.1 sugar ABC transporter ATP-binding protein -
  OG406_RS25655 (OG406_25650) - 5913314..5914372 (-) 1059 WP_081217373.1 LacI family DNA-binding transcriptional regulator -
  OG406_RS25660 (OG406_25655) recD/recD2/recDB 5914562..5916817 (+) 2256 WP_329187977.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG406_RS25665 (OG406_25660) - 5917060..5918349 (+) 1290 WP_081217371.1 citrate synthase -
  OG406_RS25670 (OG406_25665) - 5918992..5921241 (-) 2250 WP_266848419.1 heavy metal translocating P-type ATPase -
  OG406_RS25675 (OG406_25670) - 5921328..5921567 (-) 240 WP_164370583.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81447.98 Da        Isoelectric Point: 6.9757

>NTDB_id=677901 OG406_RS25660 WP_329187977.1 5914562..5916817(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01428]
MSTQAGADQQGERRTATLEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQAGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATIQGIRRYLGSGLVKGIGPVFADRITRHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNRPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEEQLIADAVKLLQVDTGLVIECLAELAAPAEEGEEPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLAAQVLR
LLRTDRDRMPGFRDVAWDKALAWLKDRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARARRAKVVLA
APTGRAAKRLSELTGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLAVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVEQRLTVRTDEDEEVGYEFDELDELAHAYALTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGV

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=677901 OG406_RS25660 WP_329187977.1 5914562..5916817(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01428]
ATGTCCACTCAGGCGGGGGCCGACCAGCAGGGCGAGCGGCGAACGGCGACGCTGGAAGGCGTGCTGGAGCGCATCACGTA
CGCGAACGAGGAGAGCGGTTACACGGTCGCGCGGGTCGACACCGGCCGCGGCGCGGGCGACCTGCTCACGGTGGTCGGAG
CGCTCCTCGGCGCGCAGGCCGGCGAGTCCCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCCGCCACGATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGCCCCGTCTTCGCCGACCGGATCACCCGGCACTTCGGGCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCCGGACTCGGCCCCAAGCGCACGGGCCGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCCGTCGTGAAGAACCGGCCCTACCGCCTGGCGTCGGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCGGTCGGTATCCCGCACGACAGCCCGGAGCGCGTCAAGGCCGGCCTCCAGTACGCGCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTATCTCCCCGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCCCCCGCCGAGGAGGGCGAGGAGCCCGGGGTCGTCCGCGAGAAGGTGCCGGGACCGG
ACGGCGGCGACCCGGTGACGGCGGTCTACCTGGTCCCCTTCCACCGCGCCGAACTGTCCCTCGCCGCCCAGGTGTTGCGC
CTGCTGCGCACCGACCGCGACCGGATGCCCGGCTTCCGCGACGTGGCCTGGGACAAGGCCCTCGCGTGGCTGAAGGACAG
GACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCCGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGCG
GCCCCGGCTGCGGCAAGTCGTTCACCGTCCGCTCGATCGTCGAGCTGGCCCGCGCCCGGCGCGCCAAGGTGGTCCTCGCC
GCCCCCACCGGCCGGGCCGCCAAGCGGCTCTCCGAGCTGACCGGCGCCGACGCGTCCACCGTGCACCGCCTGTTGGAGCT
CAAGCCGGGCGGCGACGCGGCGTACGACAGGGATCGCCCGCTCGACGCCGACCTGGTCGTCGTCGACGAGGCCTCGATGC
TCGACCTGCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCCCCGGGCGCGCACCTGCTCTTCGTCGGCGACGTGGACCAG
TTGCCCAGCGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTCGCCGACCGCGGCCCGGTCCCCGCGGTGCGGCTCACCCG
GGTCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGCCGGCTCGCGGTGGACGTGGCGGCCCGTCGG
ATTCCGGCCAAGTTCGGCCTCGACCCGCGCCGGGACATCCAGGTCCTCGCACCCATGCACCGGGGCCCCGCGGGCGCCGG
CCATCTCAACGGCCTGCTGCAGCAGGCCATCACCCCCGGCCGCCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGCGTCT
TCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGC
GTCGTCACCTCCCTCGATCCCGTCGAGCAGCGCCTGACGGTGCGCACGGACGAGGACGAGGAGGTGGGGTACGAGTTCGA
CGAACTCGACGAGCTGGCGCACGCCTACGCGCTGACCATCCACCGCTCCCAGGGCAGCGAGTATCCGGCGGTGGTGATCC
CGGTCACCACCAGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTGACCCGCGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTGTCGGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTCTCCGGCGTCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(105-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.53

100

0.366