Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QMF07_RS01385 Genome accession   NZ_CP095730
Coordinates   280057..282453 (+) Length   798 a.a.
NCBI ID   WP_033533010.1    Uniprot ID   -
Organism   Listeria innocua strain H0996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275057..287453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF07_RS01365 (EWI68_01365) - 276209..277357 (+) 1149 WP_003762369.1 cysteine desulfurase family protein -
  QMF07_RS01370 (EWI68_01370) mnmA 277376..278491 (+) 1116 WP_207578542.1 tRNA 2-thiouridine(34) synthase MnmA -
  QMF07_RS01375 (EWI68_01375) - 278609..279349 (+) 741 WP_003766975.1 alpha/beta hydrolase -
  QMF07_RS01380 (EWI68_01380) - 279393..280031 (+) 639 WP_010991587.1 tetratricopeptide repeat protein -
  QMF07_RS01385 (EWI68_01385) recD2 280057..282453 (+) 2397 WP_033533010.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QMF07_RS01390 (EWI68_01390) pieS 282483..283922 (-) 1440 WP_003771912.1 two component system sensor histidine kinase PieS -
  QMF07_RS01395 (EWI68_01395) pieR 283919..284605 (-) 687 WP_003762357.1 two component system response regulator PieR -
  QMF07_RS01400 (EWI68_01400) - 284773..286275 (+) 1503 WP_207578541.1 ABC transporter permease -
  QMF07_RS01405 (EWI68_01405) - 286284..286979 (+) 696 WP_010991584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90179.46 Da        Isoelectric Point: 4.8394

>NTDB_id=677731 QMF07_RS01385 WP_033533010.1 280057..282453(+) (recD2) [Listeria innocua strain H0996]
MAEQESLALFNDTQEELFMKGTMLSTIFYNAENLFSVVRILVKETNAIWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQIEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENIMEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=677731 QMF07_RS01385 WP_033533010.1 280057..282453(+) (recD2) [Listeria innocua strain H0996]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCAAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGAATTCTAGTAAAAGAGACGAATGCGATTTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTCCCAGCACTTCATGAACAAGAAGTGTATACTTTTTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGGTTTCGAAAAGAGATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAAGGGATTGGTAAAGTAACAGCGGAAAACATTGTCGATACAATTGGTGATGACGCGATTACGAAAATAC
TATCTGACCCAAGTTTACTAAATACTGTTCCTAAACTGCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAGCATGTAATGGTTGGTTTAAATGAATATGGCTTTGGTCCACAATTATCTATGAAAATTTTTCAAGT
ATATAAACAAAATGCAATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCTGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAACCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGCTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGGGAAGTAACTTATCTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAATAGAAAAACTTGCAGAAGAACAAAAAATAATTACCG
AAAACACGCGCGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTACCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTTGGGGAACTTGAAGAGCGCATTGGCGTGCATTA
CGGGGAATCTCAACGTGCGGCATTAGAACAAGCTTTAATGTCACCGATGCTCGTTCTTACTGGAGGACCAGGAACAGGGA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACATGCCTATAAAGAT
GGTGCGACTTTTCCAGTGTTACTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGCCTTCCTGC
AATGACGATTCACCGGTTACTTGGAATGAATGGTCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGCGACCAAGACCAGCTTCCATCTGTTGGACCTGGTCAAGTATTAAAAGATATTCTTCAATCAGAACA
AATTCCGACGGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCCATCATTGAAATGGCTCATTATATCAAAG
AAGGAATGCTGCCAGCTGATTTTGCGAAAAATAGTGCCGATCGGTCATTTTTCCACTGTACTGTAAATCAAATTGGTGAC
GTTGTGGAACAAGTCGTTAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAGGATATTCAAGTGTTGGCTCCAATGTATCG
TGGACCAGCCGGGATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGATACTGGTCGACGAAAAGAAG
TACAATTTGGCGAAATCAAATACCGGGTTCACGACAAAGTACTACAACTAATCAACCAACCAGAAAAAAATGTTTTTAAC
GGTGACATTGGCGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACGGAGGTTTCTTATTATCGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GTAGTGAGTTTCCGATTGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGTAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACCACTCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTATGGAGATTGATCCAATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.56

98.622

0.568