Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AS079_RS09550 Genome accession   NZ_CP095728
Coordinates   1921721..1924117 (+) Length   798 a.a.
NCBI ID   WP_033533010.1    Uniprot ID   -
Organism   Listeria innocua strain 2015L-6726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916721..1929117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS079_RS09530 (AS079_09530) - 1917873..1919021 (+) 1149 WP_033533007.1 cysteine desulfurase family protein -
  AS079_RS09535 (AS079_09535) mnmA 1919040..1920155 (+) 1116 WP_033533008.1 tRNA 2-thiouridine(34) synthase MnmA -
  AS079_RS09540 (AS079_09540) - 1920273..1921013 (+) 741 WP_003766975.1 alpha/beta hydrolase -
  AS079_RS09545 (AS079_09545) - 1921057..1921695 (+) 639 WP_077916477.1 tetratricopeptide repeat protein -
  AS079_RS09550 (AS079_09550) recD2 1921721..1924117 (+) 2397 WP_033533010.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AS079_RS09555 (AS079_09555) pieS 1924147..1925586 (-) 1440 WP_050511683.1 two component system sensor histidine kinase PieS -
  AS079_RS09560 (AS079_09560) pieR 1925583..1926269 (-) 687 WP_003762357.1 two component system response regulator PieR -
  AS079_RS09565 (AS079_09565) - 1926437..1927939 (+) 1503 WP_033533011.1 ABC transporter permease -
  AS079_RS09570 (AS079_09570) - 1927948..1928643 (+) 696 WP_010991584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90179.46 Da        Isoelectric Point: 4.8394

>NTDB_id=677714 AS079_RS09550 WP_033533010.1 1921721..1924117(+) (recD2) [Listeria innocua strain 2015L-6726]
MAEQESLALFNDTQEELFMKGTMLSTIFYNAENLFSVVRILVKETNAIWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQIEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENIMEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=677714 AS079_RS09550 WP_033533010.1 1921721..1924117(+) (recD2) [Listeria innocua strain 2015L-6726]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCAAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGAATTCTAGTAAAAGAGACGAATGCGATTTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTCCCAGCACTTCATGAACAAGAAGTGTATACTTTTTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGGTTTCGAAAAGAAATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAAGGGATTGGTAAAGTAACAGCGGAAAACATTGTCGATACAATTGGTGATGACGCGATTACGAAAATAC
TATCTGACCCAAGTTTACTAAATACTGTTCCTAAACTGCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTTTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGCCCGCAATTATCCATGAAAATTTTTCAGGT
ATATAAACAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCTGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAACCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGCTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGGGAAGTAACTTATCTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAATAGAAAAACTTGCAGAAGAACAAAAAATAATTACCG
AAAACACGCGCGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTACCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTTGGGGAACTTGAAGAGCGCATTGGCGTGCATTA
CGGGGAATCTCAACGTGCGGCATTAGAACAAGCTTTAATGTCACCGATGCTTGTTCTTACTGGAGGACCAGGAACAGGGA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACATGCCTATAAAGAT
GGTGCGACTTTTCCAGTGTTACTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGCCTTCCAGC
AATGACGATTCACCGGTTACTTGGAATGAATGGCCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGCGACCAAGACCAGCTTCCATCTGTTGGACCTGGTCAAGTATTAAAAGATATTCTTCAATCAGAGCA
AATTCCAACGGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCCTCGATTATTGAAATGGCTCATTATATCAAAG
AAGGAATGCTGCCAGCTGATTTTGCGAAAAATAGTGCAGATCGATCATTTTTCCATTGTACAGTAAACCAAATTGGCGAT
GTTGTGGAACAAGTCGTTAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAGGATATTCAAGTGTTGGCTCCAATGTATCG
TGGCCCAGCCGGGATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGATACTGGTCGACGAAAAGAAG
TACAATTTGGCGAAATCAAATACCGGGTTCACGACAAAGTGTTGCAACTAATCAATCAACCGGAAAAAAATGTCTTTAAC
GGTGACATTGGCGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACGGAGGTTTCTTATTATCGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GTAGTGAGTTTCCGATTGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGGAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACCACTCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTATGGAGATTGATCCAATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.56

98.622

0.568