Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB346_RS06160 Genome accession   NZ_CP095727
Coordinates   1191504..1193900 (+) Length   798 a.a.
NCBI ID   WP_207576707.1    Uniprot ID   -
Organism   Listeria innocua strain 2010L-1951     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1186504..1198900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB346_RS06140 (AB346_06140) - 1187656..1188804 (+) 1149 WP_207576709.1 cysteine desulfurase family protein -
  AB346_RS06145 (AB346_06145) mnmA 1188823..1189938 (+) 1116 WP_207576708.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB346_RS06150 (AB346_06150) - 1190056..1190796 (+) 741 WP_003766975.1 alpha/beta hydrolase -
  AB346_RS06155 (AB346_06155) - 1190840..1191478 (+) 639 WP_010991587.1 tetratricopeptide repeat protein -
  AB346_RS06160 (AB346_06160) recD2 1191504..1193900 (+) 2397 WP_207576707.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB346_RS06165 (AB346_06165) pieS 1193930..1195369 (-) 1440 WP_207576706.1 two component system sensor histidine kinase PieS -
  AB346_RS06170 (AB346_06170) pieR 1195366..1196052 (-) 687 WP_003766968.1 two component system response regulator PieR -
  AB346_RS06175 (AB346_06175) - 1196221..1197723 (+) 1503 WP_207576705.1 ABC transporter permease -
  AB346_RS06180 (AB346_06180) - 1197732..1198427 (+) 696 WP_010991584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90089.27 Da        Isoelectric Point: 4.8725

>NTDB_id=677664 AB346_RS06160 WP_207576707.1 1191504..1193900(+) (recD2) [Listeria innocua strain 2010L-1951]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNANWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRTGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILKSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDTLNKKLQEIFNPNDTGRRKEVQLGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=677664 AB346_RS06160 WP_207576707.1 1191504..1193900(+) (recD2) [Listeria innocua strain 2010L-1951]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCCAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGGATTCTAGTAAAAGAGACGAATGCGAATTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTTCCAGCGCTTCATGAACAAGAAGTGTATACTTTTTACGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGATTTCGAAAAGAAATGCCTCAATCTCGCACTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAGGGGATTGGTAAAGTAACGGCGGAAAACATTGTCGATACAATTGGCGATGACGCGATTACGAAAATAC
TATCTGATCCAAGTTTACTAAATACTGTTCCTAAACTTCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGT
ATATAAACAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGACGTTAAAGGAATTGGTTTCCAGC
GTGCCGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAATCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGTTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGTGAAGTAACTTATTTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAGTAGAAAAACTTGCAGAAGAACAAAAAATAATTACAG
AAAATACGCGTGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTATCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTAGGAGAACTTGAAGAACGTATTGGCGTGCATTA
CGGGGAATCTCAACGCGCGGCATTAGAACAAGCATTAATGTCACCGATGCTCGTCCTTACTGGAGGACCAGGAACAGGAA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACACGCCTATAAAGAC
GGTGCGACTTTTCCGGTGTTGCTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGACTTCCTGC
AATGACAATTCACCGGTTACTTGGAATGAATGGCCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGTGACCAAGACCAACTTCCTTCTGTTGGACCAGGTCAAGTATTAAAAGATATTCTAAAGTCAGAACA
AATTCCAACAGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCAATCATTGAAATGGCTCATTATATTAAAG
AAGGAATGTTACCAGCCGATTTTGCGAAAAATAGTGCGGATCGATCATTTTTCCACTGTACAGTAAATCAAATTGGCGAC
GTTGTGGAACAAGTCGTGAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAAGATATTCAAGTGTTGGCTCCAATGTATCG
CGGTCCAGCGGGGATTGATACATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGACACTGGTCGCCGAAAAGAAG
TACAATTGGGCGAAATCAAATATCGGGTTCACGACAAAGTGTTACAACTAATCAACCAACCGGAAAAAAATGTCTTTAAC
GGAGATATTGGTGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACGGAGGTTTCGTATTATCGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATAGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGGAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACAACGCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTACGGAGATTGATCCGATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.98

98.747

0.563