Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB348_RS01425 Genome accession   NZ_CP095724
Coordinates   278714..281110 (-) Length   798 a.a.
NCBI ID   WP_247379659.1    Uniprot ID   -
Organism   Listeria innocua strain F6217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 273714..286110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB348_RS01405 (AB348_01405) - 274187..274882 (-) 696 WP_010991584.1 ABC transporter ATP-binding protein -
  AB348_RS01410 (AB348_01410) - 274891..276393 (-) 1503 WP_247379655.1 ABC transporter permease -
  AB348_RS01415 (AB348_01415) pieR 276562..277248 (+) 687 WP_187126532.1 two component system response regulator PieR -
  AB348_RS01420 (AB348_01420) pieS 277245..278684 (+) 1440 WP_247379657.1 two component system sensor histidine kinase PieS -
  AB348_RS01425 (AB348_01425) recD2 278714..281110 (-) 2397 WP_247379659.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB348_RS01430 (AB348_01430) - 281136..281774 (-) 639 WP_010991587.1 tetratricopeptide repeat protein -
  AB348_RS01435 (AB348_01435) - 281818..282558 (-) 741 WP_187122324.1 alpha/beta hydrolase -
  AB348_RS01440 (AB348_01440) mnmA 282676..283791 (-) 1116 WP_003766976.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB348_RS01445 (AB348_01445) - 283810..284958 (-) 1149 WP_247379661.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90203.51 Da        Isoelectric Point: 4.9790

>NTDB_id=677583 AB348_RS01425 WP_247379659.1 278714..281110(-) (recD2) [Listeria innocua strain F6217]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNANWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILKSKQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTRRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=677583 AB348_RS01425 WP_247379659.1 278714..281110(-) (recD2) [Listeria innocua strain F6217]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCCAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGGATTCTAGTAAAAGAGACGAATGCGAATTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTTCCAGCGCTTCATGAACAAGAAGTGTATACTTTTTACGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGATTTCGAAAAGAAATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAGGGGATTGGTAAAGTAACGGCGGAAAACATTGTCGATACAATTGGCGATGACGCGATTACGAAAATAC
TATCTGATCCAAGTTTACTAAATACTGTTCCTAAACTTCCTTCTGGAACAGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGT
ATATAAGCAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCCGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAATCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGTTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGTGAAGTAACTTATTTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAGTAGAAAAACTTGCAGAAGAACAAAAAATAATTACAG
AAAATACGCGTGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTATCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTAGGAGAACTTGAAGAACGTATTGGCGTGCATTA
CGGGGAATCTCAACGCGCGGCATTAGAACAAGCATTAATGTCACCGATGCTCGTCCTTACTGGAGGACCAGGAACAGGAA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACACGCCTATAAAGAC
GGTGCGACTTTTCCGGTGTTGCTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGACTTCCTGC
AATGACAATTCACCGGTTACTTGGAATGAATGGCCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAAATGTCAATGGTGGATATTTGGCTTGCGAATCAATTATTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGTGACCAAGACCAACTTCCTTCTGTTGGACCAGGTCAAGTATTAAAAGATATTCTAAAGTCAAAACA
AATTCCAACAGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCAATCATTGAAATGGCTCATTATATTAAAG
AAGGAATGTTACCAGCCGATTTTGCGAAAAATAGTGCGGATCGATCATTTTTCCACTGTACAGTAAATCAAATTGGCGAC
GTTGTGGAACAAGTCGTGAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAAGATATTCAAGTGTTGGCTCCAATGTATCG
CGGTCCAGCGGGGATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGACACTCGTCGTCGAAAAGAAG
TACAATTTGGCGAAATCAAATATCGGGTTCACGACAAAGTGTTACAACTAATTAACCAACCAGAAAAAAATGTTTTTAAC
GGTGACATTGGTGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACGGAGGTTTCTTATTACAGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATAGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGGAGAGATTTGTTATATACTGGC
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACAACGCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAAATGACAAATAAACGAATATTAA
CTGCCGAAAACATTACGGAGATTGATCCGATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(347-554)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564