Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG568_RS33805 Genome accession   NZ_CP109480
Coordinates   7609744..7611477 (-) Length   577 a.a.
NCBI ID   WP_329534283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01450     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7604744..7616477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG568_RS33795 (OG568_33845) - 7606213..7607523 (+) 1311 WP_329534281.1 RNA polymerase sigma factor -
  OG568_RS33800 (OG568_33850) rcrQ 7607816..7609744 (-) 1929 WP_329534282.1 ABC transporter ATP-binding protein Regulator
  OG568_RS33805 (OG568_33855) rcrP 7609744..7611477 (-) 1734 WP_329534283.1 ABC transporter ATP-binding protein Regulator
  OG568_RS33810 (OG568_33860) - 7611693..7613147 (-) 1455 WP_329534284.1 FGGY family carbohydrate kinase -
  OG568_RS33815 (OG568_33865) - 7613362..7613667 (-) 306 WP_054233549.1 hypothetical protein -
  OG568_RS33835 (OG568_33885) - 7614428..7615507 (-) 1080 WP_329534285.1 cellulase family glycosylhydrolase -
  OG568_RS33840 (OG568_33890) - 7615945..7616202 (-) 258 WP_329536534.1 DUF1932 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62560.72 Da        Isoelectric Point: 6.3219

>NTDB_id=677422 OG568_RS33805 WP_329534283.1 7609744..7611477(-) (rcrP) [Streptomyces sp. NBC_01450]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVFCNIGAVYYGA
RTASSVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFESANSQLTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIAGGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PSAPVVELRRHGHLEIRGAGFRYPGAEEPVLKSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=677422 OG568_RS33805 WP_329534283.1 7609744..7611477(-) (rcrP) [Streptomyces sp. NBC_01450]
GTGCTCATACGACTCCTTCGGACCTACCTCAGTCCGTACAAGAAACCCATCGCTCTCCTCGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCGACTCTGAACGCGCACATCATCGACAACGGTGTCGTCAAGGGAGACACGGGCTACA
TCCTGTCCTTCGGGGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCTTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCCTCCGTCGGCCGGGACATCCGGGCCGCCGTGTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAAGTGGG
CCACTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCCGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTACCGCTCTCCGCGGTC
CTGGTCGCCGTGGTGCCGGTACTCGGCATCGGAGTGACCCTGATCGTGCGCCGGCTGCGCCCGCTGTTCAGGACCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCGAGTCCGCCAACTCCCAGCTGACCGAGGTGTCCCTCGGTACGGGCCGGATGCTCGCCCTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGCGCCCACCGCATCGCCGGCGG
CGGCATGCAGATCGGCGACCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTGGACACCTCGTCCAGCGTCGTGCCC
CCGAGCGCGCCCGTCGTGGAACTGCGGCGCCACGGCCACCTGGAGATCCGCGGCGCCGGGTTCCGCTATCCGGGCGCCGA
GGAGCCCGTCCTGAAGTCCATCGAACTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGACGGAGAAGTCCTCGTCGACGGCGTGGACGTGGCG
ACCGTCGAGCCGAAGCTGCTCGCGAAGACGGTCGGACTCGTCCCCCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCCAC
CAACCTCCGCTACGGCAATCCGGACGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGAACGGTCTGGACTCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGCCTC
GCGATCGCCCGCACCCTCGTCCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGCGCGGCGCTCTCCCAGGAGACGGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGCGTGTCGACCATCC
GTGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTGGTGGGCACCGGGCGTCACCACGAGCTCATGGCCGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.995

100

0.414