Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG445_RS40380 Genome accession   NZ_CP109470
Coordinates   9322622..9323575 (+) Length   317 a.a.
NCBI ID   WP_329528457.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01462     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 9317622..9328575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG445_RS40360 (OG445_40385) - 9317861..9318853 (+) 993 WP_329528455.1 LacI family DNA-binding transcriptional regulator -
  OG445_RS40365 (OG445_40390) - 9318928..9320610 (+) 1683 WP_168531877.1 ABC transporter substrate-binding protein -
  OG445_RS40370 (OG445_40395) - 9320707..9321684 (+) 978 WP_329528456.1 ABC transporter permease -
  OG445_RS40375 (OG445_40400) - 9321698..9322618 (+) 921 WP_329293072.1 ABC transporter permease -
  OG445_RS40380 (OG445_40405) amiE 9322622..9323575 (+) 954 WP_329528457.1 ABC transporter ATP-binding protein Regulator
  OG445_RS40385 (OG445_40410) - 9323572..9324615 (+) 1044 WP_329528458.1 ATP-binding cassette domain-containing protein -
  OG445_RS40390 (OG445_40415) - 9324612..9326144 (+) 1533 WP_329528459.1 glycoside hydrolase family 32 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34849.31 Da        Isoelectric Point: 6.2484

>NTDB_id=677020 OG445_RS40380 WP_329528457.1 9322622..9323575(+) (amiE) [Streptomyces sp. NBC_01462]
MEPVLEVNGLRVEYRSDGRTVVGANDVSFSIGAGEVFGLAGESGCGKSTIANAVMRLLKPPAEITAGSIRFQGRDVLALD
PRELRAFRWREIAMVFQSAMNSLNPVLTIGEQIVDIFTTHEKLKKRLARERAGELLQLVGIDAGRLTAYPHQLSGGMRQR
VVIAMAVALHPRLLIMDEPTTALDVVVQQEIMAQIRDLQRELGFSILFITHDMSLMIELSDRMGVMYGGRIVELADAKDL
FAGPLHPYTEALMNAFPPLTGPRQELTGLFDAPRTADSCGFHVRCPEDRSDCSMNIPDLREIAPGRWVAQSAKGAPR

Nucleotide


Download         Length: 954 bp        

>NTDB_id=677020 OG445_RS40380 WP_329528457.1 9322622..9323575(+) (amiE) [Streptomyces sp. NBC_01462]
ATGGAACCCGTACTTGAGGTGAACGGCCTGCGCGTCGAATACCGCAGCGACGGACGTACCGTCGTGGGCGCCAACGACGT
CTCCTTCTCCATCGGCGCCGGAGAGGTCTTCGGCCTCGCCGGGGAGTCCGGCTGCGGCAAATCGACCATCGCAAACGCGG
TGATGCGGCTGCTGAAGCCCCCGGCGGAGATCACCGCGGGCAGCATCCGCTTCCAGGGCAGGGACGTCCTCGCCCTGGAC
CCACGGGAGCTGCGCGCCTTCCGGTGGCGTGAGATCGCCATGGTCTTCCAGTCGGCGATGAACTCCCTCAACCCCGTCCT
GACCATCGGCGAGCAGATCGTCGACATCTTCACCACCCACGAGAAGCTGAAGAAGCGGCTCGCGCGGGAGCGGGCCGGCG
AGCTGCTTCAGCTGGTCGGCATCGACGCGGGAAGGCTGACGGCGTACCCGCACCAGCTCTCCGGCGGCATGCGCCAGCGC
GTGGTCATCGCCATGGCCGTCGCACTCCACCCCCGGCTGCTGATCATGGACGAGCCGACCACCGCGCTCGACGTGGTCGT
GCAGCAGGAGATCATGGCGCAGATCCGCGACCTCCAGCGGGAGCTGGGCTTCTCCATTCTCTTCATCACCCACGACATGT
CCCTGATGATCGAGCTGTCGGACCGCATGGGCGTGATGTACGGCGGACGGATCGTCGAACTCGCCGACGCCAAGGACCTG
TTCGCGGGGCCGCTCCACCCCTACACCGAGGCGCTGATGAACGCCTTCCCGCCGCTGACCGGCCCGCGCCAAGAGCTCAC
CGGCCTTTTCGACGCCCCGCGCACCGCCGACAGTTGCGGCTTCCACGTCCGCTGTCCCGAGGACCGCTCGGACTGCTCCA
TGAACATCCCCGACCTGCGCGAGATCGCCCCCGGCCGGTGGGTCGCCCAGAGTGCCAAGGGAGCCCCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-180)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(232-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

39.286

97.161

0.382
  amiE Streptococcus thermophilus LMG 18311

38.312

97.161

0.372
  amiE Streptococcus thermophilus LMD-9

38.312

97.161

0.372