Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MUG87_RS08515 Genome accession   NZ_CP095462
Coordinates   1631006..1633345 (-) Length   779 a.a.
NCBI ID   WP_247087046.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1626006..1638345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS08495 (MUG87_08495) - 1627020..1627196 (-) 177 WP_247087042.1 hypothetical protein -
  MUG87_RS08500 (MUG87_08500) dtd 1627435..1627875 (-) 441 WP_247087043.1 D-aminoacyl-tRNA deacylase -
  MUG87_RS08505 (MUG87_08505) - 1627888..1630080 (-) 2193 WP_247087044.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MUG87_RS08510 (MUG87_08510) - 1630494..1631006 (-) 513 WP_247087045.1 adenine phosphoribosyltransferase -
  MUG87_RS08515 (MUG87_08515) recJ 1631006..1633345 (-) 2340 WP_247087046.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MUG87_RS08520 (MUG87_08520) - 1633398..1634294 (-) 897 WP_247087047.1 cation diffusion facilitator family transporter -
  MUG87_RS08525 (MUG87_08525) secDF 1634406..1636655 (-) 2250 WP_247087048.1 protein translocase subunit SecDF -
  MUG87_RS08530 (MUG87_08530) - 1636704..1636985 (-) 282 WP_247087049.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87982.95 Da        Isoelectric Point: 5.7577

>NTDB_id=676956 MUG87_RS08515 WP_247087046.1 1631006..1633345(-) (recJ) [Ectobacillus sp. JY-23]
MLQAKTRWRQKTGNEELIESLSHSLGLTPFVTALLVHRGLQTETAITNFLYTEKQDFHDPFLLQDMKKVTDRIYRAIKEQ
EPVLIFGDYDADGVSSTTVLYEALQELGAQVEFYIPNRFTEGYGPNEGAFRWAKEAGFSLIITVDTGISAVKEANLAKEL
GIDLIITDHHEPPPQLPDAYAIIHPKLDDYPFKELAGVGVAFKVAHALLGRVPEHLLEIAVIGTIADLVPLHGENRLLAK
RGIEKLRQTKRPGLLALLQVANSNPKEANEETIGFTIGPRINAVGRLEDAAPAVHLLLTEDIEEAKGLAEEIDALNKQRQ
EIVKQIAQEAIQEVEELYPPEQNKVLVIAREGWNAGVVGIVASKLVERFYRPTIILSIDHDKGIAKGSARSIEGFDLFAN
LSDCRDILPHFGGHPMAAGMTLQLEDVDELRVRLNKLADIQLMPEDLLPVTEIDVTCQPRDITLSSIAEMSMLAPFGVGN
PKPRLHIEDASLESIRQIGADGSHLKLTMRDEEVRLDGVGFGFGQAAEEISPISKVSIVGEASINEWNNVKKPQIMIADI
AVTDWQLFDWRSMRNVEKHIAMLPKNQVKIVYFRSETLEKFSVGEYRDHLIPAAKARSHMEGNYIILLDMPPTTKHLQQM
FINAFPARIYAVFYQEMQHTFSTIPTREHFKWYYSFLRQQAPFSIVKHGAQLCAHKGWSKDTVNFMTMVFFELEFVKIKD
GVIFIAHQTQKRDLTESATYREKVNQLQLEKELVYSTYQQLKMWFQHMKDGSAHEEALR

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=676956 MUG87_RS08515 WP_247087046.1 1631006..1633345(-) (recJ) [Ectobacillus sp. JY-23]
TTGTTACAAGCGAAAACGCGGTGGCGACAAAAGACCGGTAACGAGGAACTTATCGAGAGTCTTTCGCATTCTCTCGGTTT
AACACCTTTTGTTACGGCATTGTTGGTCCACAGAGGATTACAAACAGAAACTGCAATTACAAATTTTTTGTATACAGAAA
AGCAGGATTTTCATGATCCTTTTTTACTACAGGACATGAAAAAGGTAACAGACAGAATATACAGAGCTATTAAAGAGCAA
GAACCTGTTTTGATATTTGGTGACTATGATGCAGATGGTGTAAGCAGTACCACGGTTTTATATGAAGCCTTGCAAGAGCT
TGGCGCACAGGTCGAGTTTTATATTCCCAATCGCTTTACAGAAGGGTATGGACCGAACGAAGGTGCCTTTCGCTGGGCAA
AAGAAGCAGGTTTTTCTCTCATCATCACGGTAGATACCGGAATTTCGGCAGTCAAAGAGGCAAATTTGGCGAAAGAACTT
GGAATAGATCTTATCATTACAGATCACCATGAACCGCCACCACAGCTTCCGGATGCATATGCCATTATCCATCCAAAGCT
CGATGATTATCCATTTAAAGAGCTAGCTGGTGTGGGTGTGGCGTTTAAGGTAGCGCATGCGTTGTTAGGACGTGTGCCGG
AGCATTTACTCGAAATTGCGGTGATTGGTACAATTGCTGACCTTGTGCCCCTGCACGGCGAAAATCGTTTGCTTGCAAAG
CGCGGGATTGAAAAGCTACGTCAAACAAAAAGACCGGGGCTTCTTGCGCTTTTACAAGTAGCAAATAGCAACCCAAAAGA
AGCAAATGAAGAAACGATTGGTTTTACAATTGGTCCGCGTATTAACGCCGTTGGACGCCTAGAAGACGCTGCGCCTGCGG
TTCATTTGCTTTTGACAGAAGATATAGAAGAAGCAAAAGGCTTAGCAGAAGAAATTGACGCATTAAATAAGCAAAGACAA
GAGATTGTCAAGCAAATTGCACAGGAAGCAATACAAGAGGTAGAAGAGCTGTATCCACCTGAGCAAAATAAGGTGTTGGT
GATTGCTCGTGAGGGCTGGAATGCCGGGGTTGTCGGCATTGTAGCGTCTAAGCTTGTAGAGCGCTTTTATCGACCAACCA
TTATACTGAGTATTGATCATGACAAAGGAATTGCCAAAGGATCGGCTCGAAGTATAGAAGGCTTTGATTTATTTGCAAAT
CTTTCTGATTGTCGTGATATCCTTCCGCATTTTGGAGGTCATCCGATGGCTGCAGGCATGACGTTGCAGTTAGAGGATGT
TGATGAATTGCGAGTTCGCCTTAATAAGTTGGCAGACATACAACTGATGCCGGAAGATTTACTGCCAGTTACTGAAATTG
ATGTAACGTGTCAGCCGCGTGATATCACGCTGTCTTCGATTGCAGAAATGTCTATGCTGGCACCATTCGGAGTTGGAAAC
CCAAAACCAAGATTGCATATAGAAGATGCGTCATTAGAAAGTATCAGACAAATTGGTGCAGACGGTTCGCATTTAAAGCT
TACAATGCGGGATGAAGAAGTGAGGCTTGACGGTGTTGGTTTTGGATTTGGGCAGGCTGCAGAGGAAATATCGCCGATTT
CAAAAGTATCAATTGTTGGAGAGGCGTCTATAAATGAATGGAATAACGTAAAAAAGCCGCAAATTATGATTGCTGATATT
GCAGTAACAGATTGGCAGTTATTTGACTGGCGCAGCATGAGAAATGTAGAAAAGCATATAGCCATGCTGCCTAAGAATCA
AGTAAAAATTGTTTATTTTCGTTCGGAAACGCTTGAAAAGTTTTCGGTGGGCGAATATAGAGATCATCTGATTCCGGCTG
CTAAAGCACGGTCACATATGGAAGGAAACTATATCATTTTATTGGATATGCCTCCTACAACTAAGCATTTACAGCAAATG
TTTATAAACGCTTTTCCTGCACGTATTTATGCGGTTTTTTATCAAGAAATGCAGCATACTTTCAGTACAATTCCAACAAG
AGAACATTTTAAATGGTATTATTCTTTTCTTCGTCAGCAAGCCCCTTTTTCAATTGTAAAGCATGGTGCACAGTTGTGTG
CGCATAAAGGTTGGTCAAAAGATACAGTAAATTTTATGACAATGGTGTTTTTTGAATTAGAATTTGTTAAAATAAAAGAT
GGTGTGATTTTTATTGCTCATCAAACACAAAAACGAGATTTAACAGAATCGGCAACGTATCGCGAAAAAGTAAATCAATT
ACAACTTGAAAAAGAATTGGTATATTCCACGTATCAACAATTAAAAATGTGGTTTCAACATATGAAAGACGGTTCTGCAC
ATGAGGAGGCACTTAGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(313-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-765)

DHH family (DHH)

(83-224)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.822

100

0.555