Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUG87_RS08445 Genome accession   NZ_CP095462
Coordinates   1614530..1616839 (-) Length   769 a.a.
NCBI ID   WP_247087032.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609530..1621839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS08425 (MUG87_08425) alaS 1609808..1612447 (-) 2640 WP_247087028.1 alanine--tRNA ligase -
  MUG87_RS08430 (MUG87_08430) - 1612739..1613800 (-) 1062 WP_247087029.1 AI-2E family transporter -
  MUG87_RS08435 (MUG87_08435) - 1614088..1614216 (-) 129 WP_247087030.1 DUF3918 family protein -
  MUG87_RS08440 (MUG87_08440) - 1614229..1614420 (-) 192 WP_247087031.1 hypothetical protein -
  MUG87_RS08445 (MUG87_08445) recD2 1614530..1616839 (-) 2310 WP_247087032.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUG87_RS08450 (MUG87_08450) - 1616859..1617509 (-) 651 WP_247087033.1 tetratricopeptide repeat protein -
  MUG87_RS08455 (MUG87_08455) mnmA 1617586..1618698 (-) 1113 WP_247087034.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUG87_RS08460 (MUG87_08460) - 1618718..1619860 (-) 1143 WP_247087035.1 cysteine desulfurase family protein -
  MUG87_RS08465 (MUG87_08465) - 1619877..1620293 (-) 417 WP_247087036.1 Rrf2 family transcriptional regulator -
  MUG87_RS08470 (MUG87_08470) - 1620425..1621693 (+) 1269 WP_247087037.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 769 a.a.        Molecular weight: 86679.14 Da        Isoelectric Point: 5.2611

>NTDB_id=676955 MUG87_RS08445 WP_247087032.1 1614530..1616839(-) (recD2) [Ectobacillus sp. JY-23]
MQDTMDLFKEEHKYIKGQVLHTIFHNEDNLYSVVRMKVLETNEAFEEKDVLITGYFPRMHEEEIFTLNGVFKDHHRYGMQ
YHVEMFKKELPQTKNGIVQYLSSDLFKGIGKKTAERIVEKLGSQAISKILDDASVLDGIVKKDKAQELYQTILEHQGLEK
VMSFLGGYGFGTKLTIKIYQKYKEQTLEIIRSNPYQLIEDVEGIGFGRADEIGKAFGISGNHPDRIRAGCLFTLENVSLQ
EGHVYITTEQLIRRTIELLNHHERTVSEADITQCLEFLQGEDKLIIEQDRSYLSSLYYAEQGLVTSLFRLMGKGELESFS
EADFLMTLGSIEDKLGVQYASRQREGVQTALTHPVMILTGGPGTGKTTVINGIVEMYAAMNGLSLDAKDYNEKNPFPILL
TAPTGRAAKRMSEATGLPAGTIHRLLGWTPEGSFQRNEHEPVAGKLLIIDEFSMVDIWLANQLFKSLPSDMQVIIVGDED
QLPSVGPGQVLKDLLAAEIIPTVRLTEIYRQAEGSSVIQLAHTIKGGKVPEDIAVQKSDRSFIMCSSGQIVDVVKKVCEN
AQTKGFTAKDIQVLAPMYRGPAGINMLNQALQEVFNPAREQRRELTFGDVIYRVGDKVLQLVNQPESQVFNGDMGEIVSI
FYAKENVEQQDMLVVSFDGIEVTYTKPDFNQITHAYCCSIHKAQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKKFLI
LCGESDAFQSGISRTDDATRQTTLCERLKERTVLKEENDVEELSPYDFL

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=676955 MUG87_RS08445 WP_247087032.1 1614530..1616839(-) (recD2) [Ectobacillus sp. JY-23]
ATGCAGGACACAATGGATTTGTTTAAAGAGGAACACAAATACATAAAAGGCCAAGTCCTTCATACGATTTTTCATAACGA
AGACAATTTGTATTCTGTTGTGCGCATGAAGGTGCTAGAGACGAACGAAGCATTTGAAGAGAAAGACGTTCTGATTACTG
GTTATTTTCCGCGCATGCACGAGGAAGAAATATTTACACTAAACGGGGTGTTTAAAGATCATCATCGTTATGGCATGCAG
TATCATGTAGAGATGTTTAAAAAAGAGCTGCCGCAAACAAAGAATGGAATTGTCCAATATTTATCTAGTGATTTATTTAA
AGGAATCGGTAAAAAAACGGCTGAACGCATTGTAGAAAAACTCGGCTCACAAGCAATTTCTAAAATATTGGACGATGCAT
CGGTGTTAGATGGTATTGTGAAGAAGGATAAAGCACAGGAGCTGTATCAAACAATTCTTGAGCATCAAGGGCTTGAGAAA
GTCATGAGCTTTTTGGGCGGCTATGGCTTTGGCACCAAGCTAACCATTAAAATTTATCAGAAGTATAAAGAGCAAACGTT
AGAAATCATCCGTAGCAATCCATATCAGCTGATTGAGGATGTTGAAGGTATTGGTTTTGGGCGTGCGGATGAGATCGGAA
AAGCCTTTGGTATATCAGGTAACCATCCGGATCGGATTCGAGCGGGTTGCTTGTTTACTTTAGAAAACGTATCCTTGCAG
GAAGGACATGTCTACATTACAACAGAGCAACTAATCAGACGAACAATAGAACTGTTAAATCATCATGAACGTACTGTTTC
AGAGGCTGATATTACGCAATGTCTGGAATTTTTACAAGGAGAAGACAAGCTCATTATTGAGCAAGATCGCTCATATCTGT
CATCGTTATACTATGCAGAGCAAGGACTTGTTACTTCATTATTTCGTCTTATGGGAAAGGGAGAACTGGAATCTTTTTCA
GAAGCCGATTTTCTTATGACCCTTGGCTCTATTGAGGATAAGCTTGGTGTGCAATATGCCTCCCGGCAAAGGGAAGGGGT
ACAAACAGCACTTACGCATCCCGTGATGATTTTAACAGGTGGACCAGGTACAGGAAAAACAACGGTAATCAATGGTATTG
TTGAAATGTATGCCGCTATGAACGGATTGTCTTTAGACGCAAAGGACTACAACGAAAAAAATCCGTTTCCTATTTTACTT
ACAGCTCCAACAGGCCGCGCGGCAAAGCGCATGAGTGAAGCTACGGGTTTGCCTGCAGGTACAATTCATCGTTTGCTTGG
ATGGACGCCGGAAGGATCCTTTCAGCGCAATGAGCATGAACCAGTAGCTGGAAAGTTACTTATTATTGATGAGTTTTCCA
TGGTCGATATATGGCTTGCGAATCAGCTGTTTAAATCATTACCTTCTGATATGCAGGTCATTATTGTAGGGGATGAAGAT
CAATTGCCTTCTGTAGGACCTGGTCAAGTGTTAAAGGATTTGTTAGCAGCAGAAATTATTCCAACAGTACGTCTCACGGA
GATATACAGACAAGCGGAAGGGTCATCCGTGATTCAGCTTGCACATACAATTAAAGGTGGTAAAGTACCGGAAGATATTG
CTGTACAAAAAAGCGACCGTTCTTTTATTATGTGTAGCAGCGGCCAAATTGTTGATGTGGTTAAGAAAGTGTGTGAAAAC
GCACAAACAAAAGGCTTTACAGCAAAAGACATACAAGTACTGGCGCCAATGTACCGAGGTCCGGCAGGTATTAATATGCT
AAATCAAGCGCTTCAGGAAGTATTTAATCCAGCTCGTGAACAACGAAGAGAGCTTACCTTTGGTGATGTTATATATCGTG
TGGGCGATAAAGTGTTGCAGCTTGTTAATCAACCGGAAAGCCAAGTATTTAATGGTGATATGGGTGAAATTGTATCTATT
TTTTATGCAAAGGAAAATGTAGAGCAGCAGGATATGCTTGTCGTTTCTTTTGACGGCATTGAAGTTACGTATACAAAGCC
GGATTTTAATCAAATTACGCATGCGTATTGCTGTTCTATTCATAAAGCACAGGGTAGTGAATTTCCTATTGTCATTTTAC
CTGTTGTAAAAAGCTATTATCGTATGCTACGGCGTAATCTTCTTTATACGGCAATTACGCGCAGTAAGAAGTTTTTAATT
TTGTGCGGTGAGTCGGATGCTTTTCAGTCAGGTATTAGCCGTACGGACGATGCGACGCGGCAAACGACGCTTTGCGAGAG
GTTAAAGGAACGGACCGTATTGAAGGAAGAAAATGACGTGGAAGAACTTTCTCCTTATGATTTTTTATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-245)

AAA domain (AAA_30)

(339-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.948

100

0.599