Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG707_RS12640 Genome accession   NZ_CP109467
Coordinates   2747604..2749820 (-) Length   738 a.a.
NCBI ID   WP_329117528.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2742604..2754820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG707_RS12625 (OG707_12635) - 2743136..2743465 (+) 330 WP_329117526.1 heavy-metal-associated domain-containing protein -
  OG707_RS12630 (OG707_12640) - 2743605..2745719 (+) 2115 WP_329127759.1 heavy metal translocating P-type ATPase -
  OG707_RS12635 (OG707_12645) - 2746121..2747410 (-) 1290 WP_329117527.1 citrate synthase -
  OG707_RS12640 (OG707_12650) recD/recD2/recDB 2747604..2749820 (-) 2217 WP_329117528.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG707_RS12645 (OG707_12655) - 2749941..2750843 (+) 903 WP_329117529.1 ribokinase -
  OG707_RS12650 (OG707_12660) - 2750899..2751834 (+) 936 WP_329117530.1 alpha/beta hydrolase -
  OG707_RS12655 (OG707_12665) - 2752054..2752521 (+) 468 WP_329117531.1 DUF937 domain-containing protein -
  OG707_RS12660 (OG707_12670) - 2752534..2752968 (-) 435 WP_329117532.1 GNAT family N-acetyltransferase -
  OG707_RS12665 (OG707_12675) - 2752999..2753709 (+) 711 WP_329117533.1 hypothetical protein -
  OG707_RS12670 (OG707_12680) - 2753783..2754247 (+) 465 WP_329117534.1 VOC family protein -
  OG707_RS12675 (OG707_12685) - 2754283..2754792 (+) 510 WP_329117536.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79352.95 Da        Isoelectric Point: 6.9786

>NTDB_id=676869 OG707_RS12640 WP_329117528.1 2747604..2749820(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01465]
MSNMAVLEGVLERITYSNEENGYTVAKVDTGRGGGDLLTVVGSLLGAQAGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGTDTLDIIEQAPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMIFLQSVGV
STSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCFLPEEQL
LSDAVKLLQVDMGLVIECLDALAAEEGVVREDVPGKDEGGQATITAVYLVPFHRAEISLASQVVRLLRTGEDRMPAFRDV
AWDKALTWLAGRTGAELAPEQEAAVKLALTEKVAVLTGGPGCGKSFTVRSIVELARARKAKVVLAAPTGRAAKRLAELTG
AEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLA
AISPVPNVRLTRIFRQAQQSGVVTNAHRINSGVQPITQGLPDFFHFVAEETEEAGLLTVDVAARRIPQKFGLNPRRDVQV
LAPMHRGPAGAGNLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALNLDEQTLTVL
TDEDEEVGYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTV
SAGRRFTALDHRLSGGGR

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=676869 OG707_RS12640 WP_329117528.1 2747604..2749820(-) (recD/recD2/recDB) [Streptomyces sp. NBC_01465]
ATGTCCAACATGGCAGTGCTGGAAGGGGTCCTGGAGCGGATCACGTACAGCAACGAGGAGAACGGCTACACGGTCGCCAA
GGTCGACACCGGCCGCGGCGGCGGTGACCTGCTGACGGTCGTCGGCTCGCTGCTCGGCGCCCAGGCCGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGATCGCATCCGCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACCGTGCTCCCCGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGGTGATGGCCGACCGCATCACCAC
CCACTTCGGCACGGACACCCTCGACATCATCGAGCAGGCGCCGAAGCGCCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCCGCCTGGGAGGAGCAGAAGGCGATCAAGGAAGTGATGATCTTCCTCCAGAGCGTCGGGGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCCTCGATCTCCGTCGTCAAGAACGAGCCGTACCGCCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AGCGCGTGAAGGCGGGCCTCCAGTACGCGCTCTCGCAATCCTCCGACCAGGGCCACTGCTTCCTCCCCGAGGAGCAGCTC
CTCAGTGACGCGGTGAAGCTGCTCCAGGTCGACATGGGCCTGGTCATCGAGTGTCTGGACGCGCTGGCCGCCGAGGAGGG
TGTCGTACGGGAAGACGTGCCCGGCAAGGACGAGGGCGGCCAGGCGACCATCACCGCCGTCTACCTCGTCCCCTTCCACC
GTGCCGAGATCTCCCTCGCCTCCCAGGTGGTCAGACTCCTGCGCACCGGCGAGGACCGGATGCCGGCTTTCAGGGACGTG
GCCTGGGACAAGGCGCTGACCTGGCTCGCGGGCCGTACGGGGGCCGAGCTCGCCCCCGAGCAGGAGGCCGCGGTGAAGCT
CGCCCTGACCGAGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACCGTCCGGTCGATTGTGGAGC
TGGCCCGCGCCCGGAAGGCCAAGGTGGTCCTCGCGGCCCCCACGGGACGGGCCGCCAAGCGCCTCGCCGAGCTCACCGGA
GCCGAGGCCTCCACGGTCCACCGGCTCCTTGAACTCAAGCCGGGCGGGGACGCCGCCTACGACAAGGACCGGCCCCTCGA
TGCAGACCTGGTCGTGGTCGACGAGGCCTCCATGCTCGACCTCCTCCTCGCCAACAAGCTGGTCAAGGCCGTCGCCCCCG
GCGCGCATCTCCTCCTGGTCGGCGATGTGGACCAGCTGCCGTCGGTCGGGGCGGGCGAGGTGCTGCGCGACCTCCTCGCG
GCGATCAGTCCCGTACCGAATGTGCGCCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTCGTCACCAACGCGCA
CCGCATCAACTCCGGGGTGCAGCCCATCACTCAGGGCCTGCCCGACTTCTTCCACTTCGTGGCCGAGGAGACCGAGGAGG
CCGGTCTGCTGACGGTGGACGTGGCGGCCCGCCGCATCCCGCAGAAGTTCGGCCTCAACCCGCGCAGGGACGTCCAGGTG
CTCGCGCCGATGCACCGGGGCCCCGCGGGCGCCGGGAACCTCAACGGGCTGCTCCAGCAGGCGATCACACCCGCCAGGCC
CGACCTCCCGGAGAAAAGGTTCGGTGGAAGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGA
AGGGTGCCAACGGGGTCTTCAACGGCACGGTCGGCGTCGTCACCGCCCTGAATCTCGACGAGCAGACGCTGACCGTACTG
ACGGATGAGGACGAGGAAGTGGGGTACGACTTCGATGAGCTCGACGAGCTGGCCCATGCGTACGCCGTCACCATCCACCG
CTCCCAGGGGAGTGAATATCCGGCGGTCGTGATTCCGGTGACCACCGGCGCTTGGATGATGCTCCAGCGGAACCTGCTCT
ACACGGCGGTCACCCGGGCCAAGAAGCTCGTGGTCCTCGTCGGGTCGCGGAAGGCGATCGGGCAGGCGGTCCGGACGGTT
TCCGCAGGCAGGCGCTTTACCGCACTTGATCACCGGCTGTCAGGTGGTGGCAGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.602

100

0.369