Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MRO11_RS12970 Genome accession   NZ_CP095336
Coordinates   2846311..2847030 (+) Length   239 a.a.
NCBI ID   WP_161425422.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 19GA03SH07     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2841311..2852030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO11_RS12950 (MRO11_12905) greB 2841523..2841999 (-) 477 WP_154169919.1 transcription elongation factor GreB -
  MRO11_RS12955 (MRO11_12910) - 2842234..2844555 (+) 2322 WP_332396414.1 Tex family protein -
  MRO11_RS12960 (MRO11_12915) - 2844850..2845320 (-) 471 WP_332396415.1 ATP-dependent Lon protease -
  MRO11_RS12965 (MRO11_12920) bioH 2845442..2846218 (-) 777 WP_154169911.1 pimeloyl-ACP methyl ester esterase BioH -
  MRO11_RS12970 (MRO11_12925) comF 2846311..2847030 (+) 720 WP_161425422.1 ComF family protein Machinery gene
  MRO11_RS12975 (MRO11_12930) nfuA 2847115..2847705 (+) 591 WP_050782704.1 Fe-S biogenesis protein NfuA -
  MRO11_RS12980 (MRO11_12935) nudE 2847896..2848456 (+) 561 WP_154169909.1 ADP compounds hydrolase NudE -
  MRO11_RS12985 (MRO11_12940) cysQ 2848465..2849292 (+) 828 WP_004394385.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MRO11_RS12990 (MRO11_12945) - 2849343..2850101 (-) 759 WP_158144603.1 type II secretion system protein N -
  MRO11_RS12995 (MRO11_12950) - 2850103..2850597 (-) 495 WP_040903895.1 type II secretion system protein M -
  MRO11_RS13000 (MRO11_12955) gspL 2850597..2851823 (-) 1227 WP_332396416.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27504.76 Da        Isoelectric Point: 8.6674

>NTDB_id=676451 MRO11_RS12970 WP_161425422.1 2846311..2847030(+) (comF) [Vibrio metschnikovii strain 19GA03SH07]
MSMWRDRISTITHAWLTPTCSLCHLPLEPQAQHGTCHACQAWYAPSLRCQRCGLPCLTITPQCGQCLRSPPPWQRLFCIG
DYRFPLSHAIHQLKYQRQFWQARHLAARLAECITEPAPLITCVPLHWRRQWQRGFNQSERLARPLAKHVGSQFDPYLFTR
TRSTPAQQQLTKSQREKNLSGAFQRLSIPHVNHVAIVDDVVTTGSTIRQLCDLLLEVGIERIDIYCLCRTPEPSDAFQP

Nucleotide


Download         Length: 720 bp        

>NTDB_id=676451 MRO11_RS12970 WP_161425422.1 2846311..2847030(+) (comF) [Vibrio metschnikovii strain 19GA03SH07]
ATGTCAATGTGGCGAGATCGGATATCGACTATCACCCACGCTTGGCTCACGCCAACCTGCAGCTTATGCCATCTGCCTTT
AGAGCCTCAAGCGCAGCATGGTACTTGCCACGCCTGCCAAGCTTGGTATGCTCCCAGCCTTCGTTGCCAGCGCTGTGGTT
TACCTTGCCTAACCATCACTCCCCAATGTGGTCAATGCTTACGTTCCCCTCCCCCTTGGCAACGGCTGTTTTGCATCGGT
GACTACCGATTCCCATTGAGTCACGCCATTCATCAACTTAAATATCAGCGTCAGTTTTGGCAAGCACGTCATTTAGCCGC
TCGACTCGCTGAATGCATCACTGAGCCAGCTCCGCTGATCACTTGCGTCCCATTACACTGGCGCAGACAATGGCAAAGAG
GGTTTAATCAAAGCGAGCGTCTTGCTCGCCCCCTTGCCAAGCACGTAGGTAGCCAGTTTGACCCGTATCTGTTTACCCGC
ACTCGCTCCACTCCCGCTCAACAACAATTAACCAAATCACAGCGTGAGAAAAATTTATCTGGTGCATTTCAACGTCTATC
GATTCCACACGTTAACCATGTCGCTATCGTCGACGATGTGGTCACTACCGGTAGCACTATCCGACAATTATGTGATTTAC
TGCTTGAAGTTGGCATCGAAAGGATTGATATTTATTGCTTATGCCGCACTCCTGAGCCGAGCGATGCATTCCAGCCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.593

98.745

0.598
  comF Vibrio campbellii strain DS40M4

46.781

97.49

0.456