Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MRO13_RS00965 Genome accession   NZ_CP095311
Coordinates   203718..204437 (-) Length   239 a.a.
NCBI ID   WP_170905305.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 198718..209437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS00935 (MRO13_00935) gspL 198920..200146 (+) 1227 WP_170905302.1 type II secretion system protein GspL -
  MRO13_RS00940 (MRO13_00940) - 200146..200640 (+) 495 WP_040903895.1 type II secretion system protein M -
  MRO13_RS00945 (MRO13_00945) - 200642..201400 (+) 759 WP_170905303.1 type II secretion system protein N -
  MRO13_RS00950 (MRO13_00950) cysQ 201456..202283 (-) 828 WP_004394385.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MRO13_RS00955 (MRO13_00955) nudE 202292..202852 (-) 561 WP_154169909.1 ADP compounds hydrolase NudE -
  MRO13_RS00960 (MRO13_00960) nfuA 203043..203633 (-) 591 WP_170905304.1 Fe-S biogenesis protein NfuA -
  MRO13_RS00965 (MRO13_00965) comF 203718..204437 (-) 720 WP_170905305.1 ComF family protein Machinery gene
  MRO13_RS00970 (MRO13_00970) bioH 204530..205306 (+) 777 WP_350940517.1 pimeloyl-ACP methyl ester esterase BioH -
  MRO13_RS00975 (MRO13_00975) - 205428..205898 (+) 471 WP_158137473.1 ATP-dependent Lon protease -
  MRO13_RS00980 (MRO13_00980) - 206194..208515 (-) 2322 WP_350939969.1 Tex family protein -
  MRO13_RS00985 (MRO13_00985) - 208600..209217 (-) 618 WP_170906651.1 hypothetical protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27524.75 Da        Isoelectric Point: 8.6720

>NTDB_id=676269 MRO13_RS00965 WP_170905305.1 203718..204437(-) (comF) [Vibrio metschnikovii strain 20CO01TI02]
MSMWRDRISTITHAWLTPTCSLCHLPLEPQAQHGTCHACQAWYAPSLRCQRCGLPCLTITPQCGQCLRSPPPWQRLFCIG
DYRFPLSHTIHQLKYQRQFWQARHLAARLSECITEPAPLITCVPLHWRRQWQRGFNQSERLARPLAKHVGSQFDPHLFTR
TRSTPAQQQLTKSQREKNLSGAFQRLSIPHVNHVAIVDDVVTTGSTIRQLCDLLLEVGIERIDIYCLCRTPEPSDAFQP

Nucleotide


Download         Length: 720 bp        

>NTDB_id=676269 MRO13_RS00965 WP_170905305.1 203718..204437(-) (comF) [Vibrio metschnikovii strain 20CO01TI02]
ATGTCAATGTGGCGAGATCGGATATCGACTATCACCCACGCTTGGCTCACGCCAACCTGCAGCTTATGCCATCTGCCTTT
AGAGCCTCAAGCGCAGCATGGTACTTGCCACGCCTGCCAAGCTTGGTATGCTCCCAGCCTTCGTTGCCAGCGCTGTGGTT
TACCTTGCCTAACCATCACTCCCCAATGTGGTCAATGCTTACGTTCCCCTCCCCCTTGGCAACGGCTGTTTTGCATCGGT
GACTACCGATTCCCATTGAGTCACACCATTCATCAACTTAAATATCAGCGTCAGTTTTGGCAAGCACGTCATTTAGCCGC
TCGACTCTCTGAATGCATCACTGAGCCAGCTCCGCTGATCACTTGCGTCCCATTACACTGGCGCAGACAATGGCAAAGAG
GGTTTAATCAAAGCGAGCGTCTTGCTCGCCCCCTTGCCAAGCACGTAGGTAGCCAGTTTGACCCGCATCTGTTTACCCGC
ACTCGCTCCACTCCCGCTCAACAACAATTAACCAAATCACAGCGTGAGAAAAATTTATCTGGTGCATTTCAACGTCTATC
GATTCCACACGTTAACCATGTCGCTATCGTCGACGATGTGGTCACTACCGGTAGCACTATCCGACAATTATGTGATTTAC
TGCTTGAAGTTGGCATCGAAAGGATTGATATTTATTGCTTATGCCGCACTCCTGAGCCGAGCGATGCATTCCAGCCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

59.746

98.745

0.59
  comF Vibrio campbellii strain DS40M4

46.352

97.49

0.452