Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG318_RS33485 Genome accession   NZ_CP109438
Coordinates   7287087..7289351 (+) Length   754 a.a.
NCBI ID   WP_329368153.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7282087..7294351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG318_RS33470 (OG318_33440) - 7282402..7284354 (-) 1953 WP_329368148.1 substrate-binding domain-containing protein -
  OG318_RS33475 (OG318_33445) - 7284344..7285876 (-) 1533 WP_329368150.1 sugar ABC transporter ATP-binding protein -
  OG318_RS33480 (OG318_33450) - 7285873..7286907 (-) 1035 WP_329368151.1 LacI family DNA-binding transcriptional regulator -
  OG318_RS33485 (OG318_33455) recD/recD2/recDB 7287087..7289351 (+) 2265 WP_329368153.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG318_RS33490 (OG318_33460) - 7289960..7291249 (+) 1290 WP_329368155.1 citrate synthase -
  OG318_RS33495 (OG318_33465) - 7291968..7294250 (-) 2283 WP_329368156.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 754 a.a.        Molecular weight: 81760.41 Da        Isoelectric Point: 6.5801

>NTDB_id=676263 OG318_RS33485 WP_329368153.1 7287087..7289351(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01483]
MSNQVGNRQTQLAVVEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATVQGIRRYLGSGLVKGIGPIFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIAEAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSADQGH
CFLPEEQLIADAVKLLQVDTGLVIECLAELAEPTVDENEPGGVREPGVVRERVPGPDGGPETVTAVYLVPFHRAELSLSA
QLLRLLRTTEDRMPGFHDVAWDKALTWLKGRTGAELAPGQEEAVRLALTKKVAVLTGGPGCGKSFTVRSIVELARAKRAK
VVLAAPTGRAAKRLAELTGADASTVHRLLELRPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVG
DVDQLPSVGAGEVLRDLLADQSPIPSVRLTQVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDETEEAGRLTVDV
AARRIPAKFGLDPRRDIQVLAPMHRGPAGAGTLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFN
GTVGVVTSLDSEEQRLTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAK
KLVVLVGSRKAIGQAVRTVSAGRRCTSLAYRLAT

Nucleotide


Download         Length: 2265 bp        

>NTDB_id=676263 OG318_RS33485 WP_329368153.1 7287087..7289351(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01483]
ATGTCCAATCAGGTGGGGAACCGGCAGACGCAGCTGGCGGTTGTCGAGGGCGTGCTCGAGCGGATCACGTACGCCAACGA
GGAGAACGGGTACACGGTCGCCCGGGTGGACACCGGCCGCGGCGCCGGCGACCTGCTCACCGTCGTGGGCGCACTCCTCG
GCGCCCAGGTGGGGGAGTCGCTCCGGATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACGGTGGAG
AACTACACGACCGTCCTCCCCGCCACCGTCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTCGTCAAGGGCATCGGCCC
GATCTTCGCCGACCGCATCACCCAGCACTTCGGGCTGGACACGCTCCAGATCATCGAGGAGGAGCCGAAGCGGCTCATCG
AGGTCCCCGGCCTCGGTCCCAAGCGCACCAAGAAGATCGCCGAGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCGACGTCGATCGCGGTGCGCATCTACAAGAAGTACGGCGACGCGTCGATCTCGGT
CGTCAAGAACCAGCCCTACCGCCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCCGAGCGGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCGCCGACCAGGGCCAC
TGCTTCCTCCCCGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACGGGCCTGGTCATCGAGTGCCT
GGCCGAACTGGCGGAGCCGACCGTGGACGAGAACGAACCCGGTGGCGTACGGGAGCCGGGCGTCGTACGCGAGAGGGTCC
CCGGTCCCGACGGCGGTCCCGAGACGGTCACGGCCGTCTACCTGGTCCCCTTCCACCGCGCCGAACTCTCCCTCTCGGCC
CAGCTGTTGCGCCTGCTGCGCACCACCGAGGACCGCATGCCCGGTTTCCACGACGTGGCCTGGGACAAGGCACTGACCTG
GCTGAAGGGGCGTACGGGCGCGGAGTTGGCGCCCGGACAGGAGGAGGCCGTACGGCTGGCGCTGACCAAGAAGGTCGCGG
TGCTCACCGGGGGCCCCGGCTGCGGCAAGTCGTTCACGGTCCGCTCGATCGTGGAGCTGGCGCGCGCCAAGCGGGCGAAG
GTGGTGCTCGCGGCGCCGACGGGCCGCGCCGCCAAGCGACTCGCCGAGCTGACCGGAGCGGACGCGTCCACCGTGCACCG
GCTCCTGGAGCTCAGGCCGGGCGGTGACGCGGCGTACGACAAGGACCGGCCGCTGGACGCCGACCTGGTGGTCGTGGACG
AGGCCTCCATGCTCGACCTCCTCCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGGGCGCCCACCTGCTGTTCGTCGGA
GACGTCGACCAGCTCCCCAGCGTCGGTGCCGGCGAGGTCCTGCGCGACCTGCTCGCCGACCAGAGCCCCATCCCCTCCGT
CCGGCTGACCCAGGTCTTCCGCCAGGCCCAGCAGTCCGGAGTGGTGACGAACGCACACCGGATCAACTCGGGTCAACATC
CCGTCACCGACGGCATGAAGGACTTCTTCCTCTTCGTCGAGGACGAGACCGAGGAGGCCGGGCGGCTCACCGTCGACGTG
GCGGCACGGCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGCCGGGACATCCAGGTGCTGGCCCCCATGCACCGCGGCCC
GGCGGGCGCGGGCACCCTCAACGGCCTGTTGCAGCAGGCGATCACGCCAGGCCGCCCCGACCTCCCCGAAAAACGCTTCG
GCGGCCGTGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGCAACAACTACGAAAAAGGCGAGAACGGCGTCTTCAAC
GGCACGGTGGGTGTGGTCACCTCACTCGACTCCGAGGAGCAGCGTCTGACGGTGCTGACCGACGAGGACGAGGAAGTCCC
CTACGACTTCGACGAACTCGACGAGCTGGCCCACGCGTACGCGGTGACGATCCACCGCTCCCAGGGCAGCGAGTACCCCG
CGGTGGTGATTCCGGTCACCACCGGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTATACGGCGGTCACCCGGGCGAAG
AAGCTCGTCGTCCTGGTCGGCTCCCGCAAGGCGATCGGCCAGGCGGTCCGCACGGTGTCGGCGGGCCGCCGCTGCACGTC
CCTCGCCTACCGCCTCGCCACGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

AAA domain (AAA_30)

(355-534)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix domain (HHH_5)

(102-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.677

100

0.363