Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MUU74_RS08750 Genome accession   NZ_CP095185
Coordinates   1828241..1828894 (-) Length   217 a.a.
NCBI ID   WP_245144331.1    Uniprot ID   -
Organism   Chryseobacterium daecheongense strain F23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1823241..1833894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU74_RS08730 (MUU74_08780) - 1823671..1825251 (+) 1581 WP_245144325.1 Na+/H+ antiporter -
  MUU74_RS08735 (MUU74_08785) der 1825369..1826679 (+) 1311 WP_245144327.1 ribosome biogenesis GTPase Der -
  MUU74_RS08740 (MUU74_08790) upp 1826760..1827413 (+) 654 WP_245144328.1 uracil phosphoribosyltransferase -
  MUU74_RS08745 (MUU74_08795) - 1827416..1828105 (-) 690 WP_245144330.1 alpha/beta fold hydrolase -
  MUU74_RS08750 (MUU74_08800) comF 1828241..1828894 (-) 654 WP_245144331.1 ComF family protein Machinery gene
  MUU74_RS08755 (MUU74_08805) - 1828943..1830448 (-) 1506 WP_245144332.1 helix-turn-helix domain-containing protein -
  MUU74_RS08760 (MUU74_08810) aceB 1830576..1832150 (+) 1575 WP_245144333.1 malate synthase A -
  MUU74_RS08765 (MUU74_08815) aceA 1832246..1833526 (+) 1281 WP_245144335.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25499.65 Da        Isoelectric Point: 9.4913

>NTDB_id=676003 MUU74_RS08750 WP_245144331.1 1828241..1828894(-) (comF) [Chryseobacterium daecheongense strain F23]
MILDVIFPNRCISCSRIIDGKLLVCNLCLAQIRFSHFDYHGENILKERCKLLFPIENAYALMEFEKESVSRKIIHQLKYQ
SREKIGKILAEWTHERIEFNHEKPDILVSVPLHPKKQRKRGYNQLHVYTETLAEFYNIPYQHDLLKRNHYSKAQALKNKK
RRLESQNTFSITRSVSNQHILLIDDVFTTGNTLSMIAWEILKAGNNKVSVLVMAMDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=676003 MUU74_RS08750 WP_245144331.1 1828241..1828894(-) (comF) [Chryseobacterium daecheongense strain F23]
ATGATTTTAGATGTAATTTTCCCGAACCGCTGCATCAGCTGCAGCAGGATCATTGACGGCAAACTGCTTGTCTGTAACTT
ATGCTTAGCCCAGATCCGTTTTTCTCATTTTGATTATCACGGTGAAAATATACTTAAAGAGAGGTGTAAGCTTCTGTTTC
CTATTGAAAATGCTTATGCTTTAATGGAATTTGAAAAAGAGAGTGTCAGCAGAAAAATCATCCATCAATTAAAATATCAA
AGTCGGGAAAAAATTGGGAAAATACTTGCCGAGTGGACGCATGAACGTATAGAGTTTAATCATGAAAAACCGGACATCTT
GGTTTCTGTACCTCTGCATCCTAAAAAGCAAAGGAAAAGAGGCTACAACCAGTTACATGTATACACGGAAACACTGGCAG
AATTCTACAATATTCCCTACCAACACGATCTGCTCAAAAGAAACCACTACTCGAAAGCCCAAGCTTTGAAGAATAAAAAG
CGCAGATTGGAAAGTCAAAATACCTTTTCGATTACACGGTCTGTTTCGAATCAGCATATTTTACTGATCGATGATGTTTT
TACCACCGGAAATACACTTTCCATGATTGCCTGGGAAATTTTAAAAGCAGGAAATAACAAAGTGAGTGTTTTGGTAATGG
CGATGGATGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.152

100

0.512