Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG700_RS28210 Genome accession   NZ_CP109419
Coordinates   6090584..6092317 (-) Length   577 a.a.
NCBI ID   WP_405622029.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01508     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6085584..6097317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG700_RS28200 (OG700_28125) - 6087125..6088369 (+) 1245 WP_405618330.1 RNA polymerase sigma factor -
  OG700_RS28205 (OG700_28130) rcrQ 6088650..6090584 (-) 1935 WP_405618332.1 ABC transporter ATP-binding protein Regulator
  OG700_RS28210 (OG700_28135) rcrP 6090584..6092317 (-) 1734 WP_405622029.1 ABC transporter ATP-binding protein Regulator
  OG700_RS28215 (OG700_28140) - 6092488..6093939 (-) 1452 WP_405618334.1 FGGY-family carbohydrate kinase -
  OG700_RS28220 (OG700_28145) - 6094028..6094324 (-) 297 WP_405618336.1 YtxH domain-containing protein -
  OG700_RS28240 (OG700_28165) - 6095291..6096073 (+) 783 WP_405618338.1 ferritin-like domain-containing protein -
  OG700_RS28245 (OG700_28170) - 6096070..6096927 (+) 858 WP_405618341.1 ferritin-like domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62692.77 Da        Isoelectric Point: 6.4105

>NTDB_id=675962 OG700_RS28210 WP_405622029.1 6090584..6092317(-) (rcrP) [Streptomyces sp. NBC_01508]
MLLRLLRTHLAPYKRAISLLVALQLLQTCASLYLPTLNADIIDNGVVKGDTGYIMEFGGLMIAVSVAQVLGQIGAVYYGA
RTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKERFKGANTGLTEMQLATGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PKDPVRTLRRHGHLEVRGAEFRYPGAEEPVLRDVSLTARPGETTAVIGSTGSGKSTLLGLVPRLVDATAGEVLVDGENVR
GLDPALLAKTVSMVPQKPYLFSGTVATNLRYGNPDATDDELWHALDVAQAKEFVSDLEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETSEATVVIVAQRVSTIRDADRIIVMDEGRVVGEGRHHELMAEN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=675962 OG700_RS28210 WP_405622029.1 6090584..6092317(-) (rcrP) [Streptomyces sp. NBC_01508]
GTGCTGCTACGACTGCTCAGAACACATCTGGCCCCCTACAAGAGAGCCATCAGCCTGCTGGTGGCGCTCCAACTGCTCCA
GACCTGCGCCAGCCTCTACCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCATGGAGTTCGGCGGTCTCATGATCGCCGTGAGCGTCGCCCAGGTTCTGGGTCAGATAGGCGCCGTCTACTACGGTGCG
CGCACCGCGTCGGCCCTCGGCCGTGACGTGCGGGCCGCGATCTTCGACCGGGTGCAGAGCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCGTCGCTGATCACGCGTACCACCAACGACGTGCAGCAGGTGCAGATGCTGGTGCTCATGTCGTTCA
CGTTGATGGTGTCCGCCCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTCGCCGTCGTGCCGGTCCTCGGCATCTCCGTGAGCCTGATCGTGAGGCGGATGCGCCCGCTGTTCCGCACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
AGTACGAGAAGGAGCGGTTCAAGGGCGCCAACACCGGTCTCACCGAGATGCAGTTGGCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACGGTCGTGAACGTGTCGTCGGTCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTGCTGGACACCAGGTCGAGTGTCGTCCCG
CCGAAGGATCCGGTGCGGACGCTGCGCCGGCACGGTCATCTGGAGGTGCGGGGCGCGGAGTTCCGCTATCCGGGGGCCGA
GGAACCGGTGCTGCGCGATGTGTCGCTGACCGCCCGGCCGGGCGAGACGACCGCGGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACACTGCTGGGGCTGGTGCCCCGGCTGGTCGACGCGACGGCCGGCGAGGTGCTGGTCGACGGGGAGAACGTACGG
GGGCTCGATCCGGCGCTGCTGGCCAAGACGGTCAGCATGGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACGGTGGCGAC
GAACCTGCGTTACGGGAATCCGGACGCGACCGACGACGAGCTGTGGCACGCGCTGGACGTCGCGCAGGCCAAGGAGTTCG
TCTCCGATCTGGAGGGCGGGCTGAACGCGCCCGTCGCGCAGGGCGGGACGAACGTCTCCGGCGGGCAGCGCCAGCGCCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATATACCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACGGA
CGCGGCCCTGCGCGCCGCCCTGGCGCGCGAGACCTCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCATCGTCATGGACGAGGGCCGGGTGGTCGGTGAGGGGCGTCATCACGAGCTGATGGCCGAGAAC
CAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.138

100

0.402