Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG700_RS28165 Genome accession   NZ_CP109419
Coordinates   6077483..6079246 (+) Length   587 a.a.
NCBI ID   WP_405618318.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01508     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6072483..6084246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG700_RS28130 (OG700_28055) - 6072662..6072862 (-) 201 WP_405618303.1 hypothetical protein -
  OG700_RS28135 (OG700_28060) - 6073104..6073883 (+) 780 WP_405618306.1 sulfite exporter TauE/SafE family protein -
  OG700_RS28140 (OG700_28065) - 6073947..6074576 (-) 630 WP_405618308.1 class F sortase -
  OG700_RS28145 (OG700_28070) - 6074753..6075286 (-) 534 WP_405618310.1 hypothetical protein -
  OG700_RS28150 (OG700_28075) - 6075531..6076304 (-) 774 WP_405618312.1 aminotransferase class IV -
  OG700_RS28155 (OG700_28080) soxR 6076324..6076779 (-) 456 WP_405618314.1 redox-sensitive transcriptional activator SoxR -
  OG700_RS28160 (OG700_28085) - 6076832..6077470 (+) 639 WP_405618316.1 NADPH-dependent FMN reductase -
  OG700_RS28165 (OG700_28090) rcrP 6077483..6079246 (+) 1764 WP_405618318.1 ABC transporter ATP-binding protein Regulator
  OG700_RS28170 (OG700_28095) rcrQ 6079243..6081123 (+) 1881 WP_405618320.1 ABC transporter ATP-binding protein Regulator
  OG700_RS28175 (OG700_28100) cutA 6081146..6081481 (+) 336 WP_405618322.1 divalent-cation tolerance protein CutA -
  OG700_RS28180 (OG700_28105) - 6081770..6082038 (+) 269 Protein_5570 CbiX/SirB N-terminal domain-containing protein -
  OG700_RS28185 (OG700_28110) - 6082074..6083438 (+) 1365 WP_405618324.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 62988.27 Da        Isoelectric Point: 6.6274

>NTDB_id=675959 OG700_RS28165 WP_405618318.1 6077483..6079246(+) (rcrP) [Streptomyces sp. NBC_01508]
MLIRLLGAQLRPYRGLLALSVVLQLIQTLATLYLPTLNADIINNGVLRGETDHILSSGAVMIAVTLLQITAAGAAVYVGA
RVAMGVGRDLRSAVFSRVQDFSAREMSHFGTASLITRTTNDVQQVQTLTVLALTVLVAAPLTWMGGAVMAVDQDPPLALL
LLLFIPLLAGVIGLILVRMPVLFRGMQERIDNVNRMMREQITGIRVIRAFVRDEHEQKRYGGANRELMTVALRVGGLMAL
IMPSVILVWELATVSIIWFGGHRINSGELQAGSLIAFLSYLMQILMAVMMTLFLLMQVPRAAVSAERIKEVLDTESSVVP
PSPSVSASVTALHGPRGEPGRLEIRGAGFSYPGAEEPVLTGIDLTAASGRTTAVVGSTGSGKTTLLHLVPRLFDATAGEV
RIGGVDVRDMDPALLARTVGLVPQKPYLFSGTVASNLRYGKPDATDEELWQALKIAQAREFVAALPEGLDAPVSQGGGNL
SGGQRQRLAIARVLVTKPALYLFDDSFSALDYTTDAALRTALAEETWATGATVVIVAQRVSTIRGADRIVVLDQGRVVGT
GSHEQLMRDNDTYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=675959 OG700_RS28165 WP_405618318.1 6077483..6079246(+) (rcrP) [Streptomyces sp. NBC_01508]
ATGCTGATCCGACTTCTCGGCGCCCAACTGCGCCCCTACAGAGGGCTGCTCGCCCTGTCCGTCGTACTCCAACTGATCCA
GACCCTGGCCACCCTCTATCTGCCCACCCTCAACGCCGACATCATCAACAACGGCGTCCTGCGCGGCGAGACGGACCACA
TTCTGTCCTCCGGAGCCGTGATGATCGCCGTCACCCTGCTCCAGATCACCGCCGCCGGAGCCGCCGTCTACGTCGGCGCC
CGCGTCGCCATGGGCGTCGGCCGTGATCTGCGGTCCGCCGTCTTCTCCCGCGTACAGGACTTCTCCGCACGGGAGATGAG
CCACTTCGGCACCGCCTCACTGATCACCCGCACCACCAACGACGTGCAACAGGTGCAGACGCTCACGGTCCTCGCCCTGA
CCGTGCTCGTCGCCGCGCCGCTGACCTGGATGGGCGGCGCCGTGATGGCCGTCGACCAGGACCCCCCGCTCGCGCTGCTC
CTGCTGCTCTTCATCCCCCTCCTTGCCGGAGTGATCGGGCTGATCCTCGTCCGTATGCCGGTGCTCTTCCGCGGTATGCA
GGAACGCATCGACAACGTCAACCGGATGATGCGCGAGCAGATCACCGGCATCCGGGTGATCAGGGCCTTCGTCCGCGACG
AGCACGAGCAGAAGCGGTACGGCGGTGCGAACCGCGAGCTGATGACCGTCGCCCTGCGCGTCGGCGGGCTCATGGCGCTG
ATCATGCCGTCCGTCATCCTCGTCTGGGAGTTGGCGACCGTCTCGATCATCTGGTTCGGCGGACACCGGATCAACTCCGG
TGAGCTGCAAGCCGGTTCGCTGATCGCCTTCCTGAGCTATCTGATGCAGATCCTGATGGCCGTGATGATGACGCTGTTCC
TGCTGATGCAGGTGCCGCGCGCCGCCGTGAGCGCGGAACGCATCAAGGAGGTTCTGGACACCGAGTCCAGCGTCGTCCCG
CCCTCCCCGTCCGTGTCGGCGTCCGTGACGGCGCTCCACGGCCCTCGCGGCGAACCCGGCCGACTGGAGATCCGGGGCGC
CGGCTTCAGCTACCCCGGCGCCGAGGAACCGGTGCTGACCGGCATCGACCTGACGGCGGCCTCGGGGCGTACCACCGCCG
TCGTCGGCTCCACGGGCAGCGGCAAGACGACCCTGCTCCATCTGGTGCCGAGACTCTTCGACGCCACGGCGGGCGAGGTA
CGGATCGGGGGAGTCGACGTACGGGACATGGACCCGGCACTGCTCGCCCGCACCGTCGGCCTCGTCCCGCAGAAGCCGTA
CCTCTTCTCCGGCACCGTCGCCTCCAACCTCCGCTACGGGAAGCCGGACGCGACCGACGAAGAGCTGTGGCAGGCGCTGA
AGATCGCGCAAGCCAGGGAGTTCGTCGCCGCGCTGCCCGAAGGGCTCGACGCCCCGGTCTCCCAGGGCGGCGGCAACCTC
TCCGGCGGCCAGCGCCAACGCCTCGCCATCGCACGGGTGTTGGTGACCAAACCGGCGCTGTACCTGTTCGACGACTCCTT
CTCCGCGCTCGACTACACGACCGACGCGGCGCTGCGGACGGCACTGGCGGAGGAGACGTGGGCCACCGGAGCGACCGTGG
TGATCGTCGCGCAGCGGGTGTCCACCATCCGTGGCGCGGACCGGATCGTCGTCCTCGACCAGGGGCGAGTCGTCGGCACC
GGCAGCCACGAACAGCTCATGCGGGACAACGACACCTACCGGGAGATCGTCCTCTCCCAGCTCACCGAGGAGGAAGCAGC
ATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(360-506)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.469

100

0.376