Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LNL76_RS09080 Genome accession   NZ_CP095161
Coordinates   1816652..1817173 (+) Length   173 a.a.
NCBI ID   WP_110480071.1    Uniprot ID   A0AAE5TFZ9
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811652..1822173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS09045 tolQ 1811922..1812605 (+) 684 WP_035688447.1 protein TolQ -
  LNL76_RS09050 tolR 1812657..1813079 (+) 423 WP_110480065.1 colicin uptake protein TolR -
  LNL76_RS09055 tolA 1813096..1814310 (+) 1215 WP_110480067.1 cell envelope integrity protein TolA -
  LNL76_RS09060 tolB 1814344..1815651 (+) 1308 WP_110480069.1 Tol-Pal system beta propeller repeat protein TolB -
  LNL76_RS09065 pal 1815662..1816114 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  LNL76_RS09080 comN 1816652..1817173 (+) 522 WP_110480071.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LNL76_RS09085 - 1817174..1817893 (+) 720 WP_110480073.1 type II secretion system protein J -
  LNL76_RS09090 - 1817895..1818560 (+) 666 WP_110480075.1 DUF2572 family protein -
  LNL76_RS09095 - 1818541..1818846 (+) 306 WP_017806953.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20063.57 Da        Isoelectric Point: 8.7144

>NTDB_id=675794 LNL76_RS09080 WP_110480071.1 1816652..1817173(+) (comN) [Avibacterium paragallinarum strain ZJ-C]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLKPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKEISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=675794 LNL76_RS09080 WP_110480071.1 1816652..1817173(+) (comN) [Avibacterium paragallinarum strain ZJ-C]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGACTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGTAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTAAAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGCGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCTGGGGATAAACGAACACTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGAGATCTCTTCTTTGAGTGCTTGTGGAGATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.786

97.11

0.503