Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA12_RS07330 Genome accession   NZ_CP095104
Coordinates   1440875..1443289 (-) Length   804 a.a.
NCBI ID   WP_107547995.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435875..1448289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA12_RS07305 (MUA12_07265) - 1435952..1436593 (-) 642 WP_107548217.1 O-methyltransferase -
  MUA12_RS07310 (MUA12_07270) - 1436836..1437147 (-) 312 WP_002481100.1 DUF1292 domain-containing protein -
  MUA12_RS07315 (MUA12_07275) ruvX 1437172..1437597 (-) 426 WP_002481101.1 Holliday junction resolvase RuvX -
  MUA12_RS07320 (MUA12_07280) - 1437601..1437864 (-) 264 WP_023015119.1 IreB family regulatory phosphoprotein -
  MUA12_RS07325 (MUA12_07285) alaS 1437933..1440563 (-) 2631 WP_107547994.1 alanine--tRNA ligase -
  MUA12_RS07330 (MUA12_07290) recD2 1440875..1443289 (-) 2415 WP_107547995.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA12_RS07335 (MUA12_07295) - 1443292..1443960 (-) 669 WP_107547996.1 tetratricopeptide repeat protein -
  MUA12_RS07340 (MUA12_07300) mnmA 1444062..1445174 (-) 1113 WP_262576909.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA12_RS07345 (MUA12_07305) - 1445177..1446319 (-) 1143 WP_002481107.1 cysteine desulfurase family protein -
  MUA12_RS07350 (MUA12_07310) - 1446502..1447506 (+) 1005 WP_262576911.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90553.93 Da        Isoelectric Point: 4.5122

>NTDB_id=675464 MUA12_RS07330 WP_107547995.1 1440875..1443289(-) (recD2) [Staphylococcus simulans strain IVB6179]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDNMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGVGKKTAENIVNTLGENTINKILDDRSVLEDVPNLSKKKQSQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMSIYQVYQSDTLQTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTIEEECIKQG
HTFLPKDYVLETSLEMLSKGYDQTIDASMLEKMILELTEESKLVEADETLSIPSLYYSEVKSVQNLYRIASHQAKLENIE
QSDLQINIGEIEEMNGVNYASSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETHGLSLSYDDYQEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDAKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITERFHDRSFIPCTAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
ARENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGHEGETNEEQADEQINDQTTSAPAQQLVELTEATIYEIDPMIGMGKVTPYT
FNHE

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=675464 MUA12_RS07330 WP_107547995.1 1440875..1443289(-) (recD2) [Staphylococcus simulans strain IVB6179]
TTGGAGAACCCTACATTGTTTGACTATTCGATGGTCAAAGGAACAGTAGAAGCAATCTTATTTCAAAATAAAGATAATTT
CTATACCGTATTAAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATAATATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCTGAAGGCGATGTTTATACCTTCAAAGGTCAAGCTGTGACACACCCTAGATACGGCAAACAATTAAAAGCTGAA
ACTTTCGAAAAAGAAGTGCCGCAAACAAAAGATGCGATTATCAGTTACTTATCAAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCTGAAAATATCGTAAATACACTTGGTGAAAATACCATCAATAAAATTTTAGATGATCGTTCAGTCCTAGAAG
ATGTACCGAATTTATCTAAAAAGAAACAAAGTCAAATCGCAGATCAAATCTACAGTAACCAAGAAGTAGAAAAAATTATG
ATCAGACTTCATGATTTAGGCTTCGGTCCGAAATTAGCGATGAGCATCTATCAAGTTTATCAAAGTGACACCTTACAAAC
GATAGAGAAAAATCCATATGATCTTGTCTATGATGTACGCGGTGTCGGTTTCCATAAAGCAGATACTTTAGCTAAGAATT
TAGGCATAGAATATAACGCCCCTGAACGCTTAAAAGCAGGTCTGCTTTATACGATAGAAGAAGAATGTATTAAACAAGGT
CATACATTTTTACCTAAAGATTATGTATTAGAAACTTCGTTAGAGATGTTAAGCAAGGGATATGACCAAACGATAGATGC
CAGTATGTTAGAAAAAATGATACTTGAATTGACAGAAGAAAGTAAGTTGGTGGAAGCGGATGAAACACTATCTATCCCAA
GCTTATATTATTCAGAAGTCAAAAGTGTGCAGAACCTGTATCGTATTGCGTCACATCAAGCTAAATTAGAGAATATTGAA
CAATCTGACTTACAAATCAATATTGGTGAAATCGAGGAAATGAATGGAGTCAACTACGCATCTTCTCAAAAAGAAGCACT
TGAAACAGCGATTAATTCAAAAGTCATGCTGCTGACAGGTGGTCCAGGTACCGGTAAAACAACGGTTATCAAAGGCATCG
TTGAACTCTATGCGGAAACGCATGGTTTATCCTTATCCTATGACGATTACCAAGAAGATGATTATCCGATAGCGCTTGCT
GCACCTACAGGACGTGCAGCCAAACGTTTACAAGAATCGACTGGACTTGAAGCAATGACCATCCATCGTTTAATCGGCTG
GAGTCAAGATACCAAGCCTGAAGATGTCTTAGAAAATGAAATTACTGCTAAGCTCATCATTATTGATGAAATGTCGATGG
TAGATACATGGTTGTTTCATCAGTTCTTAAATGCAGTGCCGATTGATGCACAAATCATTTTAGTCGGAGATGAAGACCAG
TTACCATCAGTCGGCCCAGGACAAGTGTTTAAAGATTTAATTGATGCGAAAGTCATTCCACGTGTTAATTTAACTGAAGT
CTACCGTCAACAAGATGGTTCTAGTATCATTGAACTCGCACATAAAATGAAATTAGGTCAGCCGATAGACATTACTGAGC
GATTCCATGATCGCAGCTTTATTCCTTGTACAGCTGAACAAATACCAGATGTAGTCAATAAAGTGGTGAGTTCTGCTGTT
AAAAAAGGCTACGATATGAGCGATATTCAAGTCTTGGCTCCGATGTATCGCGGCAGTGCCGGCATTAAGCGTTTAAATAA
AGTATTACAAGATATCTTGAATCCTAAAGCTGAAGATGCAAGAGAGATTGAGTTCGGAGAAGCGGTCTTTAGAAAGGGCG
ACAAAGTCTTACAACTTGTGAATCGTCCTAATGATAATATTTTCAATGGTGATATCGGTGTGATTGTCGGTATCTTCTGG
GCACGTGAAAACGAATTAAATAAAGATATACTTGTCGTTGATTTCGAAGGCAATGAAATTACATTTACCAAACAAGATAT
GATGGAGTTAACACATGCTTATTGTACATCCATTCATAAAGCACAAGGTTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGCATGTTGCAGCGTCCGATTATCTATACAGGACTTACACGTGCCAAACAATCTTTAGTTTTTCTT
GGTGACAGCCAAGCCTTTGACATCGGTATGAAGACCCATGGCCAAGTTCGTATGACGAGACTCGCACAATTGCTCAGAGA
TTACTTTGGTCATGAGGGTGAAACAAATGAGGAACAAGCAGATGAACAGATAAATGATCAAACAACCTCAGCACCTGCAC
AACAACTCGTAGAATTAACAGAAGCAACGATTTATGAAATTGACCCGATGATTGGTATGGGTAAGGTCACACCTTATACT
TTTAATCATGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-544)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.063

99.378

0.498