Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG346_RS02080 Genome accession   NZ_CP109394
Coordinates   486151..487173 (-) Length   340 a.a.
NCBI ID   WP_266801653.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01530 strain NBC 01530     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 481151..492173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG346_RS02070 (OG346_02070) - 481413..483863 (-) 2451 WP_405669970.1 RICIN domain-containing protein -
  OG346_RS02075 (OG346_02075) - 483930..485501 (-) 1572 WP_405669972.1 arabinofuranosidase catalytic domain-containing protein -
  OG346_RS02080 (OG346_02080) cytR 486151..487173 (-) 1023 WP_266801653.1 LacI family DNA-binding transcriptional regulator Regulator
  OG346_RS02085 (OG346_02085) - 487355..488485 (-) 1131 WP_405669973.1 GH12 family glycosyl hydrolase domain-containing protein -
  OG346_RS02090 (OG346_02090) - 489584..491437 (-) 1854 WP_405669975.1 RICIN domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36943.00 Da        Isoelectric Point: 6.6228

>NTDB_id=675439 OG346_RS02080 WP_266801653.1 486151..487173(-) (cytR) [Streptomyces sp. NBC_01530 strain NBC 01530]
MGRRRPGAPTLEEVAAHAGVGRGTVSRVVNNAAGVADSTRRAVQRAIEELGYVPNLAARSLAGQRADAVALVLTEPDWRQ
FAEPFFSEIVSSIGDGLADTGMQLMLTLVRSKSERQRFLEYARGGRVDGALLMSVHAGDRLPDMLAEARLPTVLLGRRSA
DEYVSHVDADNLGGARSAVSYLLKQGRRAIATITGPLDMYVAQARLQGYRNALELTGLKSPHSLVAEGDFSQDSGRRAMT
ELLERHPEIDGVLAASDTTAAGALQALRAAGRRVPQDVAVIGFDDFPLAQRTEPRLTTVRQPLEEIGRAMIRLLLEEIEE
PYVAWRHVILHTELVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=675439 OG346_RS02080 WP_266801653.1 486151..487173(-) (cytR) [Streptomyces sp. NBC_01530 strain NBC 01530]
ATGGGCAGGCGACGCCCTGGGGCGCCCACGCTGGAAGAGGTGGCCGCCCACGCCGGGGTGGGGCGAGGCACGGTCTCCCG
CGTCGTCAACAACGCGGCCGGCGTGGCCGATTCGACACGCCGGGCCGTACAGCGAGCCATCGAGGAACTGGGTTACGTGC
CCAATCTCGCCGCCCGGTCCCTGGCCGGGCAGCGGGCCGACGCCGTGGCCCTCGTCCTGACGGAACCGGACTGGAGGCAG
TTCGCGGAGCCGTTCTTCTCGGAAATCGTGAGTTCGATCGGCGACGGGCTGGCCGACACCGGCATGCAACTGATGCTGAC
TCTGGTCCGCTCGAAGTCCGAGCGACAGCGCTTTTTGGAGTACGCGCGCGGCGGCCGGGTCGACGGCGCCCTGCTGATGT
CCGTGCACGCGGGCGATCGGCTGCCGGACATGCTCGCCGAGGCGCGGTTGCCGACCGTGCTGCTGGGGCGTCGCTCGGCC
GACGAGTACGTCAGCCACGTGGACGCGGACAACCTGGGCGGCGCCCGCAGTGCCGTGTCCTACCTGCTGAAACAGGGCCG
TCGAGCGATCGCCACCATTACGGGACCGCTGGACATGTACGTCGCGCAGGCAAGGCTGCAGGGTTACCGCAACGCCCTGG
AGCTGACCGGTCTGAAGAGTCCGCACTCCCTGGTTGCCGAAGGCGATTTCTCGCAGGACAGCGGTCGCCGTGCCATGACG
GAGCTCCTGGAACGGCACCCGGAGATCGACGGCGTCCTCGCCGCGTCGGACACCACGGCGGCCGGGGCGCTGCAGGCGCT
GCGGGCCGCGGGACGGCGCGTTCCCCAGGACGTCGCCGTGATCGGCTTCGACGACTTTCCGCTGGCCCAGCGCACCGAGC
CGCGCCTGACCACAGTGCGCCAGCCGTTGGAGGAGATAGGACGAGCCATGATCAGGCTGCTGCTGGAGGAGATCGAGGAG
CCGTACGTGGCCTGGCGCCACGTCATCCTGCATACGGAACTGGTCGTTCGTGAGTCGGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.278

99.412

0.371