Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG750_RS12120 Genome accession   NZ_CP109391
Coordinates   2688446..2690179 (+) Length   577 a.a.
NCBI ID   WP_405767814.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01538 strain NBC 01538     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2683446..2695179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG750_RS12085 (OG750_12070) - 2683735..2684760 (-) 1026 WP_405767807.1 LD-carboxypeptidase -
  OG750_RS12090 (OG750_12075) - 2684995..2685132 (-) 138 WP_405767810.1 hypothetical protein -
  OG750_RS12110 (OG750_12095) - 2686411..2686716 (+) 306 WP_053741171.1 hypothetical protein -
  OG750_RS12115 (OG750_12100) - 2686846..2688306 (+) 1461 WP_405767812.1 FGGY-family carbohydrate kinase -
  OG750_RS12120 (OG750_12105) rcrP 2688446..2690179 (+) 1734 WP_405767814.1 ABC transporter ATP-binding protein Regulator
  OG750_RS12125 (OG750_12110) rcrQ 2690179..2692113 (+) 1935 WP_405767817.1 ABC transporter ATP-binding protein Regulator
  OG750_RS12130 (OG750_12115) - 2692350..2693741 (-) 1392 WP_405767820.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62436.89 Da        Isoelectric Point: 7.7020

>NTDB_id=675285 OG750_RS12120 WP_405767814.1 2688446..2690179(+) (rcrP) [Streptomyces sp. NBC_01538 strain NBC 01538]
MLIQLLRTYLRPYKKPIGLLVLLQLLQTCATLYLPTLNAHIIDKGVVKGDTSYILVFGAVMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVRLSSV
LVAVVPVLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKDRFGTANNELTEVSLGTGRLLAL
MFPIVMTVVNVSSIAVVWFGAHRIASGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PTAPVTELRRHGHLEIRGAGFRYPGAEEPVLKGVDVVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWRALEVAQGKEFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRKALARETAEATVVIVAQRVATIRDADRIIVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=675285 OG750_RS12120 WP_405767814.1 2688446..2690179(+) (rcrP) [Streptomyces sp. NBC_01538 strain NBC 01538]
GTGCTCATACAACTTCTGCGCACTTACCTGAGGCCTTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCCCACATCATCGACAAGGGCGTGGTGAAGGGCGACACCAGCTACA
TCCTGGTCTTCGGCGCGGTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGTACGGCGTCGGCGCTCGGCCGGGACGTACGCGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
GCAGTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTCGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGTGGCATCGTGCTCGCGCTGGGGCTCGATGTGCGGCTGTCGAGCGTG
CTGGTCGCCGTCGTGCCGGTGCTTGGCATCTGTGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGTACGGCTCGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACG
GGTACGAGAAGGACCGGTTCGGGACGGCGAACAACGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGACTGCTCGCACTG
ATGTTCCCGATCGTCATGACCGTCGTCAACGTCTCGTCGATCGCCGTGGTGTGGTTCGGCGCTCATCGCATCGCCAGCGG
TGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGTACGTCGTCCAGTGTCGTCCCG
CCGACCGCTCCGGTGACGGAGCTGCGGCGGCACGGGCATCTGGAGATCCGCGGGGCCGGGTTCCGCTATCCCGGCGCCGA
GGAGCCGGTGCTGAAGGGCGTCGACGTGGTCGCCCGGCCCGGTGAGGTGACCGCGGTGATCGGGTCCACGGGCAGTGGGA
AGTCGACGCTGCTGGGCCTCGTACCGCGACTGTTCGACGCGACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCC
ACCGTGGAGCCGAAGCTGCTGGCCAGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGGACCGTCGCGAC
CAATCTGCGGTACGGAAATCCGGACGCCACGGACGAGGAGCTGTGGCGCGCGCTGGAGGTGGCGCAGGGCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGTACGAATGTGTCGGGCGGTCAGCGTCAGCGGCTC
GCGATCGCGCGGACGCTCGTCCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCCCTGCGGAAGGCGCTCGCGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGCGTCGCCACGATCA
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGCCACCACGAGCTGATGGCGGGCAAC
GAGACCTACCGGGAGATCGTCCTGTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.423

100

0.397