Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUO15_RS01395 Genome accession   NZ_CP095075
Coordinates   266076..268403 (+) Length   775 a.a.
NCBI ID   WP_245032878.1    Uniprot ID   -
Organism   Halobacillus amylolyticus strain SSHM10-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 261076..273403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO15_RS01375 (MUO15_01375) cymR 262142..262561 (+) 420 WP_245035792.1 cysteine metabolism transcriptional regulator CymR -
  MUO15_RS01380 (MUO15_01380) - 262581..263720 (+) 1140 WP_245032874.1 cysteine desulfurase family protein -
  MUO15_RS01385 (MUO15_01385) mnmA 263743..264855 (+) 1113 WP_245035794.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUO15_RS01390 (MUO15_01390) - 265396..266058 (+) 663 WP_245032876.1 lipopolysaccharide assembly protein LapB -
  MUO15_RS01395 (MUO15_01395) recD2 266076..268403 (+) 2328 WP_245032878.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUO15_RS01400 (MUO15_01400) - 268418..269254 (+) 837 WP_245032880.1 TIM barrel protein -
  MUO15_RS01405 (MUO15_01405) - 269361..269537 (+) 177 WP_244753438.1 hypothetical protein -
  MUO15_RS01410 (MUO15_01410) - 269537..270598 (+) 1062 WP_245032882.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 88560.59 Da        Isoelectric Point: 5.0881

>NTDB_id=675031 MUO15_RS01395 WP_245032878.1 266076..268403(+) (recD2) [Halobacillus amylolyticus strain SSHM10-5]
MAERTLFSDTNEERPYVKGELNRMIFHKESEHFSIASIIVTETNEDFNEKSIVIKGHFPPLEEGETYVFNGEFQDHKKFG
RQYQVDFYKRLLPESKDGLIVYLSSDLFHGIGKKTAERIVDHLGEQAISTILNDPGVLKDVPKLAKEKRDTLYNTLKEHQ
GFEHVMIHLNQYGFGLKLSQKIYEAFKDQTLAIIEEDPYQLVFKVDGFGFHRADEMARMQELPIDHPTRLRAACLYILQQ
SLSAGHVYLPTETCLLQVESLLNSGAGEPITFEQLSKQVIHLAEDRYVFIEDERMYLPSLFHAENGFCNQLERIMDEEHE
TKHTQADLLKIIGDMEEEESISYGEDQFAAIEKALQSKVMILTGGPGTGKTTVIKGIIRAYSTLHELSTDKTDYDQGEPF
PFILAAPTGRAAKRMTESTGLPASTIHRLLVWDGHDSFDKNQNNQLEGKVLIIDEFSMVDMWLANQLFRAIPSDMQVLIV
GDEDQLPSVGPGQVLADLLASEQLPSVQLSEVYRQKEGSKIIQLAHEIKNNQCTMQSLKKDHDFNFIQAKEHQLKGLITN
IVKKALDKGIEPREVQVLAPMYRTEVGIHKLNEEIQRVVNPKSKQKRDLTFKEMTYRKGDKVIQLVNQPEDGVYNGDIGE
IAAIFRAEENVDQVEQVVVEYDGKEVVYPKKNLNNLMHAYCTSIHKSQGSEFSIVILPVVRGYRRMLRKNLLYTAITRSK
HSLIICGDPSAFLEGVQTRDTNLRYTYLAEKLKQETTQDLQEDEEEEELSPYDFM

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=675031 MUO15_RS01395 WP_245032878.1 266076..268403(+) (recD2) [Halobacillus amylolyticus strain SSHM10-5]
ATGGCAGAACGTACGCTTTTTTCCGATACAAATGAAGAACGCCCTTATGTGAAGGGGGAATTAAACCGGATGATTTTTCA
CAAGGAGTCTGAGCATTTTTCGATCGCTTCGATTATCGTTACCGAAACGAATGAAGACTTCAATGAAAAAAGCATCGTAA
TTAAAGGTCATTTCCCTCCTTTAGAGGAAGGAGAAACGTATGTTTTCAATGGAGAATTTCAAGATCATAAAAAGTTTGGC
CGCCAGTATCAGGTTGATTTTTATAAGCGATTGCTCCCAGAATCTAAGGATGGATTGATTGTTTATTTATCGAGTGATCT
TTTTCACGGAATTGGTAAGAAGACAGCAGAACGGATTGTTGATCACCTAGGGGAGCAGGCCATTTCAACTATTTTGAATG
ATCCGGGCGTATTAAAAGATGTTCCTAAACTTGCAAAAGAAAAACGCGATACGCTATATAACACACTGAAAGAACATCAG
GGATTCGAGCATGTGATGATCCATTTGAATCAATATGGGTTTGGTCTTAAGCTTTCGCAAAAAATCTACGAAGCATTTAA
AGATCAAACCTTAGCTATCATCGAAGAAGATCCTTACCAACTCGTCTTTAAAGTAGATGGATTTGGTTTTCATCGGGCAG
ATGAAATGGCCAGAATGCAGGAGCTGCCTATCGATCACCCAACAAGGTTGCGTGCAGCATGCCTATATATTCTGCAACAA
AGTCTTTCGGCAGGTCACGTTTATTTACCGACAGAAACTTGTCTCTTGCAAGTTGAAAGCCTTCTTAATAGTGGTGCGGG
TGAGCCGATTACTTTTGAACAGTTATCCAAACAGGTCATACATCTGGCTGAGGACCGTTACGTGTTTATTGAAGACGAAC
GGATGTATTTGCCATCACTTTTTCATGCCGAGAATGGTTTTTGTAACCAGCTTGAGCGGATCATGGATGAAGAGCATGAA
ACGAAGCATACCCAGGCTGATCTACTTAAGATCATCGGTGATATGGAAGAAGAGGAATCAATTAGTTATGGCGAGGACCA
ATTCGCTGCGATCGAGAAAGCCCTACAATCAAAAGTCATGATTTTAACAGGGGGTCCCGGAACAGGAAAGACAACTGTCA
TTAAGGGTATTATCAGAGCCTATTCCACACTCCACGAACTTTCAACAGACAAAACGGACTACGACCAAGGCGAACCCTTT
CCTTTTATACTTGCAGCTCCCACTGGTCGTGCAGCTAAGAGAATGACAGAGTCGACAGGGTTGCCAGCCAGTACGATTCA
CCGTCTGCTTGTTTGGGATGGTCATGACAGTTTTGATAAAAATCAGAACAACCAGCTGGAAGGCAAAGTCTTAATTATTG
ATGAGTTCTCCATGGTCGATATGTGGCTGGCCAATCAGTTATTCCGCGCCATTCCTTCAGATATGCAAGTGTTAATCGTC
GGGGATGAGGACCAGCTGCCTTCGGTCGGGCCGGGTCAGGTCCTTGCTGATTTACTAGCATCAGAACAATTGCCTTCTGT
TCAATTATCAGAAGTGTACAGGCAAAAAGAAGGCTCAAAAATTATCCAGCTTGCCCATGAGATAAAAAATAATCAATGTA
CAATGCAGTCTTTAAAAAAGGATCATGACTTTAATTTTATCCAAGCCAAGGAACACCAACTAAAAGGCCTGATCACGAAT
ATCGTTAAGAAAGCATTGGATAAAGGGATTGAACCCAGAGAAGTTCAGGTGTTGGCACCGATGTACCGGACAGAGGTAGG
GATTCATAAATTAAATGAAGAAATTCAACGCGTTGTCAATCCAAAAAGCAAGCAAAAGCGGGATCTTACTTTTAAAGAGA
TGACGTATCGAAAAGGGGATAAGGTCATCCAACTTGTCAACCAGCCTGAGGATGGCGTGTATAATGGAGATATTGGCGAA
ATCGCCGCTATTTTTCGTGCGGAAGAGAATGTTGATCAGGTGGAGCAGGTGGTTGTAGAGTATGATGGCAAAGAGGTAGT
CTATCCGAAGAAGAATTTAAATAATTTAATGCATGCGTATTGTACATCGATCCATAAATCACAAGGAAGTGAATTTTCCA
TTGTTATTCTACCGGTTGTCAGGGGTTATCGCAGGATGCTAAGGAAAAATCTCTTATATACCGCTATTACGAGGTCAAAG
CATTCCCTCATTATATGTGGAGATCCTAGTGCGTTTTTAGAAGGTGTGCAAACGAGGGACACTAACCTGCGTTACACTTA
TCTTGCAGAAAAACTTAAGCAAGAAACGACTCAGGATCTGCAAGAAGATGAAGAGGAGGAAGAGCTTTCTCCTTATGATT
TTATGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.298

100

0.498