Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUN89_RS10480 Genome accession   NZ_CP095073
Coordinates   2062059..2064383 (+) Length   774 a.a.
NCBI ID   WP_244713389.1    Uniprot ID   -
Organism   Halobacillus salinarum strain SSBR10-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2057059..2069383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN89_RS10455 (MUN89_10455) - 2057082..2058359 (-) 1278 WP_244713383.1 replication-associated recombination protein A -
  MUN89_RS10460 (MUN89_10460) cymR 2058604..2059023 (+) 420 WP_244713384.1 cysteine metabolism transcriptional regulator CymR -
  MUN89_RS10465 (MUN89_10465) - 2059042..2060184 (+) 1143 WP_244713386.1 cysteine desulfurase family protein -
  MUN89_RS10470 (MUN89_10470) mnmA 2060203..2061315 (+) 1113 WP_244713387.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUN89_RS10475 (MUN89_10475) - 2061376..2062038 (+) 663 WP_244713388.1 tetratricopeptide repeat protein -
  MUN89_RS10480 (MUN89_10480) recD2 2062059..2064383 (+) 2325 WP_244713389.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUN89_RS10485 (MUN89_10485) - 2064401..2065216 (+) 816 WP_244713390.1 TIM barrel protein -
  MUN89_RS10490 (MUN89_10490) - 2065272..2065448 (+) 177 WP_244713391.1 hypothetical protein -
  MUN89_RS10495 (MUN89_10495) - 2065455..2066516 (+) 1062 WP_244713392.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87919.80 Da        Isoelectric Point: 4.7768

>NTDB_id=674970 MUN89_RS10480 WP_244713389.1 2062059..2064383(+) (recD2) [Halobacillus salinarum strain SSBR10-3]
MEQQSLLSELEEEKPYVKGDLNRMIFHNDVEHFSIASIFVRDTNEAFNEKSLVIKGHFSPLQEGETYLFHGTFQTHQKFG
LQYEVSSYQRLLPETRDGLIMYLSSELFQGIGQKTAERIVDHLGESAISTILKDRNALDSVPKLPEAKADKLYQDLKEHQ
GFEHVMIQLSQYGVGLKLSQKIYEAFKDQTLGILQEDPYQLVFKVEGFGFHRADEIANMQKLSHDHPTRIRAACLFIMQQ
SLSEGHVYLPTEECLLQVERLLNNGSNPEITFQQLSEQLIQLGEDKHVYVEEERVYLPSLYFAENGVVRQLGRILGGELA
TEYTQAELMKMIGEIEEEEAMSYGEDQFNAIEKALHSKMMILTGGPGTGKTTVIKGIIHAFSKLNQHSIHPEDYGQGDPF
PFVLAAPTGRAAKRITESTGLPASTIHRLLGWDGHTSFEKNQNNQLEGKFLIVDEFSMVDVWLANQLFRAVPSEMQILLV
GDEDQLPSVGPGQVLADLLASRQLPAVNLTEVYRQKEGSKIIQLAHEIKNDQCTLQSLLKGDDFNFIQAGEQQLIDLVIQ
IMKKALDKGIELREVQVLAPMYRTDVGIHQLNKEIQKVVNPSKKQKRDLTFKDNTFRKGDKVIQLVNQPEDGVYNGDIGE
VAAIFREEENIDGVEQVVVEFDNKEVVYPKKDVSNLMLAYCTSIHKSQGSEFSIVILPVVRSYRRMLRKNLLYTAITRAK
DSLILCGDPHAFLEGIQTTETNLRYTQLTEKLQNEEVPEETEEEDEELSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=674970 MUN89_RS10480 WP_244713389.1 2062059..2064383(+) (recD2) [Halobacillus salinarum strain SSBR10-3]
ATGGAACAACAGTCATTACTATCAGAACTTGAGGAGGAGAAGCCTTACGTTAAAGGGGATCTCAACCGTATGATCTTCCA
TAATGATGTGGAGCATTTTTCAATAGCTTCCATATTCGTACGAGATACGAATGAGGCCTTTAATGAGAAAAGTCTTGTCA
TTAAAGGCCACTTTTCTCCCTTACAGGAAGGAGAAACGTATTTGTTCCATGGAACCTTCCAGACTCATCAAAAATTCGGT
CTCCAATATGAAGTAAGTTCTTATCAACGTCTTCTTCCCGAAACGCGAGACGGGCTGATTATGTACCTTTCCAGTGAGCT
TTTTCAAGGGATCGGCCAAAAAACTGCCGAGAGGATTGTAGATCATTTAGGGGAAAGTGCAATATCTACAATCCTCAAAG
ACCGGAACGCTCTTGATTCCGTGCCCAAGTTGCCTGAAGCGAAAGCTGACAAGCTCTATCAGGATTTAAAAGAGCATCAG
GGGTTTGAACATGTAATGATTCAGCTCTCCCAGTACGGAGTCGGCTTGAAGCTGTCTCAAAAAATTTATGAAGCATTTAA
AGACCAGACATTGGGAATCCTTCAAGAGGACCCCTATCAGCTCGTCTTTAAAGTAGAAGGATTTGGGTTTCATAGGGCAG
ATGAAATAGCTAACATGCAGAAGTTGTCTCACGACCATCCTACAAGAATCCGTGCGGCGTGTTTGTTTATTATGCAGCAA
AGCCTGTCCGAAGGTCACGTATACCTTCCAACAGAAGAGTGTTTACTCCAGGTAGAGCGATTATTAAATAATGGAAGCAA
TCCGGAAATTACGTTTCAACAGCTGTCCGAACAGCTTATTCAGCTTGGGGAAGATAAACATGTTTATGTGGAAGAAGAAA
GGGTCTATCTTCCTTCGCTTTACTTTGCTGAAAACGGGGTAGTCAGGCAGCTGGGAAGAATTCTAGGTGGCGAATTGGCA
ACCGAATATACACAAGCTGAATTGATGAAGATGATTGGAGAAATCGAAGAAGAAGAAGCGATGAGTTATGGCGAGGACCA
ATTCAATGCGATAGAAAAGGCTCTTCATTCTAAGATGATGATCTTAACAGGCGGACCTGGAACAGGCAAGACAACGGTCA
TTAAAGGGATAATTCATGCCTTTTCAAAATTAAACCAGCATTCTATACATCCCGAGGATTACGGGCAGGGTGATCCATTC
CCTTTTGTATTAGCCGCTCCTACCGGGAGAGCCGCGAAAAGAATTACAGAATCGACAGGTCTTCCGGCAAGTACCATTCA
CAGGCTGCTAGGGTGGGATGGTCATACCAGCTTCGAAAAAAATCAAAATAACCAGTTAGAAGGAAAATTTTTAATTGTTG
ATGAATTTTCCATGGTTGACGTATGGCTGGCCAATCAGCTATTCAGAGCTGTGCCTTCGGAAATGCAAATTCTGCTGGTA
GGGGATGAAGATCAGCTTCCTTCAGTGGGTCCCGGCCAGGTACTCGCCGATTTACTTGCTTCAAGACAACTTCCAGCTGT
AAATCTTACAGAAGTGTATAGACAGAAGGAAGGCTCAAAAATTATACAGCTTGCCCATGAAATTAAGAATGATCAATGTA
CACTCCAATCCCTGCTTAAAGGTGATGATTTTAATTTTATCCAGGCTGGAGAACAGCAGCTGATTGATTTGGTTATTCAA
ATTATGAAAAAAGCTTTAGATAAAGGCATAGAATTACGAGAAGTTCAAGTGCTTGCCCCGATGTATCGAACTGATGTAGG
TATACATCAACTGAATAAGGAGATCCAGAAAGTTGTGAACCCAAGTAAAAAACAAAAACGTGATCTTACCTTTAAAGACA
ACACATTTCGTAAAGGGGACAAAGTCATTCAGCTTGTCAACCAGCCTGAAGACGGTGTTTATAATGGAGATATCGGTGAA
GTGGCTGCCATTTTTAGAGAAGAAGAAAATATCGATGGAGTAGAGCAGGTTGTAGTGGAGTTTGATAATAAAGAAGTCGT
TTATCCAAAAAAGGATGTATCCAATCTTATGCTCGCCTATTGTACTTCAATTCATAAATCGCAGGGAAGTGAATTTTCCA
TCGTTATCCTGCCGGTAGTTAGAAGCTACAGAAGAATGTTAAGGAAAAACTTACTGTACACGGCCATTACCCGTGCTAAA
GACTCCTTGATTTTATGTGGGGATCCTCATGCTTTCCTGGAGGGAATCCAAACGACAGAAACTAATTTGCGTTACACGCA
GTTGACAGAGAAACTGCAAAATGAAGAAGTACCGGAAGAAACAGAGGAAGAAGATGAGGAGCTTTCTCCGTATGATTTCA
TGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

AAA domain (AAA_30)

(343-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.487