Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MUN89_RS10410 Genome accession   NZ_CP095073
Coordinates   2045360..2047672 (+) Length   770 a.a.
NCBI ID   WP_244713376.1    Uniprot ID   -
Organism   Halobacillus salinarum strain SSBR10-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040360..2052672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN89_RS10390 (MUN89_10390) spoVB 2040424..2041980 (-) 1557 WP_244713371.1 stage V sporulation protein B -
  MUN89_RS10395 (MUN89_10395) - 2042105..2042398 (+) 294 WP_244713372.1 post-transcriptional regulator -
  MUN89_RS10400 (MUN89_10400) secDF 2042565..2044841 (+) 2277 WP_244713373.1 protein translocase subunit SecDF -
  MUN89_RS10405 (MUN89_10405) - 2044967..2045302 (+) 336 WP_244713374.1 lipopolysaccharide assembly LapA domain-containing protein -
  MUN89_RS10410 (MUN89_10410) recJ 2045360..2047672 (+) 2313 WP_244713376.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MUN89_RS10415 (MUN89_10415) - 2047662..2048174 (+) 513 WP_244713377.1 adenine phosphoribosyltransferase -
  MUN89_RS10420 (MUN89_10420) - 2048325..2050526 (+) 2202 WP_244713378.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MUN89_RS10425 (MUN89_10425) dtd 2050548..2050994 (+) 447 WP_244713379.1 D-aminoacyl-tRNA deacylase -
  MUN89_RS10430 (MUN89_10430) - 2051037..2052503 (-) 1467 WP_244713380.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 86731.31 Da        Isoelectric Point: 4.8230

>NTDB_id=674969 MUN89_RS10410 WP_244713376.1 2045360..2047672(+) (recJ) [Halobacillus salinarum strain SSBR10-3]
MLQSKMRWNFTYEDSLEEVKPVNGLKPLTQQLLKNRGIIDPAHIDKFLHPSLEDLHDPFLMGGMQETVDRVKLAVQQGES
ILVYGDYDADGVSSTTVMLEALKAMGADCDFYIPNRFSEGYGPNEDAFIFAKDSGFSVIITVDTGIAAVHEAEVAKRLGM
DLIITDHHEVQETLPDAFAIIHPKTSPNYPFQELAGVGVAFKVAEALLGRLPEELLELTAIGTIADLVPLRDENRLLAYF
GLKALSRTERPGLRALKEICGVDGEINEETIGFTIGPRLNAVGRLQDAGPAVELLISNDKHEAMQLAEFINQLNQERQKI
VADIAKEAEEMVLSQNGMNRVIIAAKEGWNPGVLGIVASKLVRKFDRPAIVLGIDSETQAAKGSARSIDAFDLFQNCMEV
RERFTHFGGHAQAAGMTLPVEEIAGLQEDLNRLAAEKLSAEDYQQVLDIAMTIEIDDITLKQIEEVNQLQPFGVGNPKPL
FRVQQSPKEIRLIGSRKNHLKLQFQKAKSRLDGIAFGMGELYQKLSPQANMEVVGELGINEWNGRKNVQVMIKDLKVSEW
QLFDFRGSKQLDKQIPLPENEKYAALSFHQMEHAPHNIPVLSPTEMMEAERLDGIVVLDLPNRLEELGEVVNACKPGKIF
ACYRIEDSAFLKTWPTRDHFKFFYGMLMKRKSFNVRTEGEQLAARRGWDKSMVDFISQVFFELEFVKMEDGLLTINAKPS
QKDLQESVLYREKQYQMKVEQKLYFSTFRELKDWFNAYMESVEEEVVNGS

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=674969 MUN89_RS10410 WP_244713376.1 2045360..2047672(+) (recJ) [Halobacillus salinarum strain SSBR10-3]
ATGCTGCAAAGCAAGATGAGATGGAATTTTACATATGAAGATAGTCTGGAAGAGGTAAAGCCTGTCAATGGGCTGAAACC
GCTAACTCAACAACTATTAAAAAATCGTGGGATTATTGATCCTGCCCATATTGATAAATTTCTGCATCCTTCTCTAGAAG
ATTTACACGATCCATTTTTAATGGGTGGAATGCAGGAAACGGTAGATCGAGTAAAGCTGGCCGTTCAGCAGGGTGAATCT
ATCCTTGTTTACGGGGACTATGATGCGGATGGAGTTAGTTCAACAACGGTCATGCTTGAAGCCTTGAAGGCGATGGGGGC
AGATTGTGATTTCTATATTCCAAACCGTTTTTCTGAAGGTTATGGACCTAATGAAGACGCGTTTATTTTTGCGAAAGACT
CTGGATTTTCCGTCATCATCACAGTGGATACAGGGATTGCTGCGGTACACGAGGCAGAAGTCGCTAAGCGTCTAGGAATG
GATCTCATTATTACTGACCATCACGAAGTTCAGGAAACTCTGCCGGATGCGTTTGCCATTATCCATCCAAAGACTTCCCC
TAATTATCCATTCCAGGAGCTTGCTGGGGTTGGGGTGGCATTTAAAGTAGCTGAGGCATTGCTGGGCCGGCTTCCTGAGG
AGCTGCTGGAGCTAACAGCGATCGGTACTATTGCTGATCTTGTTCCTTTGAGGGATGAGAATCGGTTGCTGGCTTATTTT
GGTCTGAAGGCACTTTCCCGAACCGAGCGCCCAGGACTAAGAGCTTTGAAGGAAATTTGTGGTGTAGACGGGGAAATCAA
TGAAGAAACCATAGGGTTCACCATAGGTCCCCGGTTGAATGCAGTAGGACGATTACAGGATGCAGGGCCGGCTGTAGAAT
TGTTGATATCTAACGATAAGCACGAAGCCATGCAGCTGGCAGAATTTATTAATCAGCTGAATCAGGAACGTCAAAAAATC
GTAGCTGACATTGCTAAAGAGGCTGAAGAAATGGTGCTCAGCCAGAATGGTATGAATCGAGTCATCATAGCAGCTAAGGA
AGGCTGGAATCCAGGGGTTCTGGGAATTGTAGCCTCGAAGCTTGTTCGTAAATTTGACCGTCCGGCGATCGTGCTTGGGA
TTGATTCTGAGACTCAAGCAGCAAAAGGGTCAGCAAGAAGCATAGACGCTTTTGACCTTTTTCAAAATTGCATGGAGGTA
AGAGAGCGGTTTACACATTTCGGCGGACATGCGCAAGCAGCAGGAATGACTTTGCCGGTAGAGGAGATTGCGGGCTTACA
GGAAGATTTAAACCGTCTCGCAGCTGAAAAACTTTCGGCAGAAGATTACCAGCAGGTACTGGATATAGCAATGACAATTG
AAATTGACGATATTACTCTCAAGCAAATTGAAGAAGTAAATCAGCTTCAACCGTTTGGTGTAGGAAATCCTAAACCATTG
TTTCGCGTGCAGCAGTCTCCGAAGGAAATCAGATTGATTGGCAGTCGGAAAAACCATCTAAAACTCCAATTCCAAAAAGC
TAAGTCTCGTTTGGACGGCATTGCTTTTGGAATGGGGGAACTCTATCAGAAGTTATCTCCTCAAGCTAATATGGAAGTCG
TGGGGGAACTTGGAATTAATGAATGGAATGGGCGGAAAAATGTCCAAGTCATGATAAAAGACCTTAAAGTCAGCGAATGG
CAGCTCTTCGATTTTCGCGGTTCTAAGCAATTAGACAAGCAAATTCCATTGCCGGAAAATGAAAAATATGCTGCACTTTC
CTTTCACCAGATGGAGCATGCCCCTCATAATATCCCGGTGTTGAGCCCGACAGAGATGATGGAAGCTGAACGATTGGACG
GGATAGTCGTATTGGATCTGCCAAACCGGTTAGAGGAGCTGGGAGAGGTGGTCAACGCTTGCAAGCCGGGGAAAATATTT
GCATGCTACCGCATAGAAGATAGTGCATTTCTTAAAACTTGGCCGACTCGTGACCATTTTAAATTTTTCTATGGTATGCT
TATGAAGCGCAAGTCTTTTAACGTACGAACTGAAGGCGAACAGCTCGCTGCTCGGAGAGGCTGGGATAAGTCAATGGTTG
ACTTTATCTCCCAGGTGTTTTTTGAACTTGAATTTGTTAAAATGGAAGATGGTTTACTAACGATTAACGCTAAACCTTCA
CAAAAGGATTTACAGGAATCAGTTTTGTACCGTGAAAAACAGTACCAGATGAAAGTGGAACAGAAATTATACTTTTCTAC
ATTTAGAGAATTGAAGGACTGGTTCAATGCTTATATGGAATCAGTCGAGGAGGAAGTAGTAAATGGATCTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(311-432)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(561-755)

RecJ OB domain (RecJ_OB)

(451-554)

DHH family (DHH)

(81-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.551

100

0.501