Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OH781_RS12880 Genome accession   NZ_CP109376
Coordinates   2842618..2844543 (+) Length   641 a.a.
NCBI ID   WP_329451911.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01550     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837618..2849543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH781_RS12865 (OH781_12900) - 2838836..2839141 (+) 306 WP_355949919.1 YtxH domain-containing protein -
  OH781_RS12870 (OH781_12905) - 2839202..2840647 (+) 1446 WP_406371000.1 FGGY family carbohydrate kinase -
  OH781_RS12875 (OH781_12910) rcrP 2840885..2842618 (+) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OH781_RS12880 (OH781_12915) rcrQ 2842618..2844543 (+) 1926 WP_329451911.1 ABC transporter ATP-binding protein Regulator
  OH781_RS12885 (OH781_12920) - 2844560..2845678 (-) 1119 WP_030970270.1 RNA polymerase sigma factor -
  OH781_RS12890 (OH781_12925) dnaG 2845904..2847808 (-) 1905 WP_355949694.1 DNA primase -
  OH781_RS12895 (OH781_12930) - 2847959..2849218 (-) 1260 WP_330480472.1 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69145.54 Da        Isoelectric Point: 5.3060

>NTDB_id=674957 OH781_RS12880 WP_329451911.1 2842618..2844543(+) (rcrQ) [Streptomyces sp. NBC_01550]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRMPEGT
TKEQAVEGLRKTNSGLADLLSGVDFTPGHGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=674957 OH781_RS12880 WP_329451911.1 2842618..2844543(+) (rcrQ) [Streptomyces sp. NBC_01550]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
ACTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTGTACGGGATGCTGGCGGCCTGTGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGATGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGTCTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCACGGCATCGACTTCGATGCGGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTACGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGTTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCTCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATAGCCGTC
GTCGGTGGGCTGCGGGTCGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCGGACCCCGTGACGGGTGAGCGCCCGGCGGATCTGCTCGGCAGTGTCTCGCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCGCAGGGGGCTTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.199

93.916

0.378