Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB33_RS27970 Genome accession   NZ_CP109365
Coordinates   6406876..6408609 (-) Length   577 a.a.
NCBI ID   WP_164370733.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6401876..6413609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB33_RS27960 (OHB33_27945) - 6403377..6404663 (+) 1287 WP_266613529.1 RNA polymerase sigma factor -
  OHB33_RS27965 (OHB33_27950) rcrQ 6404948..6406876 (-) 1929 WP_164370732.1 ABC transporter ATP-binding protein Regulator
  OHB33_RS27970 (OHB33_27955) rcrP 6406876..6408609 (-) 1734 WP_164370733.1 ABC transporter ATP-binding protein Regulator
  OHB33_RS27975 (OHB33_27960) - 6408795..6410249 (-) 1455 WP_164370734.1 FGGY family carbohydrate kinase -
  OHB33_RS27980 (OHB33_27965) - 6410347..6410652 (-) 306 WP_164370735.1 YtxH domain-containing protein -
  OHB33_RS28000 (OHB33_27985) - 6412045..6413028 (+) 984 WP_164370736.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62454.75 Da        Isoelectric Point: 6.4229

>NTDB_id=674920 OHB33_RS27970 WP_164370733.1 6406876..6408609(-) (rcrP) [Streptomyces sp. NBC_01558]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTDYILSFGALMIGISLAQVVCNIGAVYYGA
RTASAVGRDVRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PLAPVLELRRHGHLELRGAGFRYPGAEEPVLKSVDLVARPGEITAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIGPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALDVAQAKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=674920 OHB33_RS27970 WP_164370733.1 6406876..6408609(-) (rcrP) [Streptomyces sp. NBC_01558]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGACTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCTCAGGTCGTCTGCAACATCGGAGCCGTCTACTACGGCGCC
CGCACGGCGTCCGCGGTCGGCCGGGACGTCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCCCGTGAGATGGG
TCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCACTGATGACGTTCA
CCCTCCTGGTGTCGGCCCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTCGACGTGCCGCTGTCCGCGGTG
CTCATCGCCGTGGTGCCGACCCTCGGCATCTGCGTCACGCTGATCGTGCGCCGGCTGCGCCCCCTCTTCCGCACGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTCCGCGACG
GTTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
GGGCATGCAGATCGGTGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACGGACAGCAGCGTGGTCCCG
CCCCTCGCGCCCGTCCTGGAGCTGCGCCGTCACGGCCACCTGGAGCTCCGCGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTCGTGGCACGCCCCGGGGAGATCACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTCCTCGGCCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTCCTCGTCGACGGCGTCGACGTCGCG
ACGATCGGCCCGAAGCTGCTGGCCAGAACGGTCGGACTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCCAC
CAACCTGCGCTACGGCAACCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGACGTCGCGCAGGCCAAGGGCTTCG
TCGAGCGCCTCGAAGGCGGCCTGGACGCGCCGATCGCCCAGGGCGGCACCAACGTGTCGGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCCCTGCGCGCGGCGCTCGCCGAGGAGACCGCCGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCATCACGAACTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.408

100

0.385