Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OHB33_RS26700 Genome accession   NZ_CP109365
Coordinates   6094572..6096827 (+) Length   751 a.a.
NCBI ID   WP_164370585.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6089572..6101827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB33_RS26685 (OHB33_26665) - 6089796..6091748 (-) 1953 WP_326843156.1 substrate-binding domain-containing protein -
  OHB33_RS26690 (OHB33_26670) - 6091738..6093312 (-) 1575 WP_326844086.1 sugar ABC transporter ATP-binding protein -
  OHB33_RS26695 (OHB33_26675) - 6093324..6094382 (-) 1059 WP_081217373.1 LacI family DNA-binding transcriptional regulator -
  OHB33_RS26700 (OHB33_26680) recD/recD2/recDB 6094572..6096827 (+) 2256 WP_164370585.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OHB33_RS26705 (OHB33_26685) - 6097070..6098359 (+) 1290 WP_081217371.1 citrate synthase -
  OHB33_RS26710 (OHB33_26690) - 6099003..6101252 (-) 2250 WP_326843157.1 heavy metal translocating P-type ATPase -
  OHB33_RS26715 (OHB33_26695) - 6101339..6101578 (-) 240 WP_164370583.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81443.99 Da        Isoelectric Point: 6.9757

>NTDB_id=674915 OHB33_RS26700 WP_164370585.1 6094572..6096827(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01558]
MSTQAGADQQGERRPATLEGVLERITYANEESGYTVARVDTGRGAGDLLTVVGALLGAQAGESLRMEGRWGSHPQYGKQF
TVENYTTVLPATIQGIRRYLGSGLVKGIGPVFADRITRHFGLDTLRIIEEEPKRLIEVPGLGPKRTGRIADAWEEQKAIK
EVMLFLQTVEVSTSIAVRIYKKYGDASISVVKNRPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQSTD
QGHCYLPEEQLIADAVKLLQVDTGLVIECLAELAAPAEEGEEPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLAAQVLR
LLRTDRDRMPGFRDVAWDKALAWLKDRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARARRAKVVLA
APTGRAAKRLSELTGADASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQ
LPSVGAGEVLRDLLADRGPVPAVRLTRVFRQAQQSGVVTNAHRINSGQHPLTDGMKDFFLFVEDDTEEAGRLAVDVAARR
IPAKFGLDPRRDIQVLAPMHRGPAGAGHLNGLLQQAITPGRPDLAEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVEQRLTVRTDEDEEVGYEFDELDELAHAYALTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLSGV

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=674915 OHB33_RS26700 WP_164370585.1 6094572..6096827(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01558]
ATGTCCACTCAGGCGGGGGCCGACCAGCAGGGCGAGCGGCGGCCGGCGACGCTGGAAGGCGTGCTGGAGCGCATCACGTA
CGCGAACGAGGAGAGCGGTTACACGGTCGCGCGGGTCGACACCGGCCGCGGCGCGGGCGACCTGCTCACGGTGGTCGGAG
CGCTCCTCGGTGCGCAGGCCGGCGAGTCCCTGCGCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTCCCCGCCACGATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGG
CATCGGCCCCGTCTTCGCCGACCGGATCACCCGGCACTTCGGGCTGGACACCCTGCGGATCATCGAGGAGGAGCCGAAGC
GGCTCATCGAGGTCCCCGGACTCGGCCCCAAGCGCACGGGCCGGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAG
GAGGTCATGCTCTTCCTCCAGACCGTCGAGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCGTC
GATCTCCGTCGTGAAGAACCGGCCCTACCGCCTGGCGTCGGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCG
CCCAGTCGGTCGGTATCCCGCACGACAGCCCGGAGCGCGTCAAGGCCGGCCTCCAGTACGCGCTGTCCCAGTCCACCGAC
CAGGGCCACTGCTATCTCCCGGAGGAGCAACTGATCGCGGACGCGGTGAAGTTGCTCCAGGTCGACACCGGCCTGGTCAT
CGAGTGCCTGGCCGAGCTGGCCGCCCCCGCCGAGGAGGGCGAGGAGCCCGGGGTCGTCCGCGAGAAGGTGCCGGGACCGG
ACGGCGGCGACCCGGTGACGGCGGTCTACCTGGTCCCCTTCCACCGCGCCGAACTGTCCCTCGCCGCCCAGGTGTTGCGC
CTGCTGCGCACCGACCGCGACCGGATGCCCGGCTTCCGCGACGTGGCCTGGGACAAGGCCCTCGCGTGGCTGAAGGACAG
GACGGGCGCGGAGCTGGCCCCCGAGCAGGAGGCGGCCGTCCGGCTCGCGCTCACCGAGAAGGTCGCCGTGCTCACCGGCG
GCCCCGGCTGCGGCAAGTCGTTCACCGTCCGCTCGATCGTCGAGCTGGCCCGCGCCCGGCGCGCCAAGGTGGTCCTCGCC
GCCCCCACCGGCCGGGCCGCCAAGCGGCTCTCCGAGCTGACCGGCGCCGACGCGTCCACCGTGCACCGCCTGTTGGAGCT
CAAGCCGGGCGGCGACGCGGCGTACGACAGGGACCGCCCGCTCGACGCCGACCTGGTCGTCGTCGACGAGGCCTCGATGC
TCGACCTGCTCCTCGCCAACAAGCTTGTCAAGGCGGTGCCCCCGGGCGCGCACCTGCTCTTCGTCGGCGACGTGGACCAG
TTGCCCAGCGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTCGCCGACCGCGGCCCGGTCCCCGCGGTGCGGCTCACCCG
GGTCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCCCTCACCGACG
GCATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGCCGGCTCGCGGTGGACGTGGCGGCCCGTCGG
ATTCCGGCCAAGTTCGGCCTCGACCCGCGCCGGGACATCCAGGTCCTCGCGCCCATGCACCGGGGCCCCGCGGGCGCCGG
CCATCTCAACGGCCTGCTGCAGCAGGCCATCACCCCCGGCCGCCCCGACCTCGCCGAGAAGCGGTTCGGCGGCCGCGTCT
TCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACGGTGGGC
GTCGTCACCTCCCTCGATCCCGTCGAGCAGCGCCTGACGGTGCGCACGGACGAGGACGAGGAGGTGGGGTACGAGTTCGA
CGAACTCGACGAGCTGGCGCACGCCTACGCGCTGACCATCCACCGCTCCCAGGGCAGCGAGTATCCGGCGGTGGTGATCC
CGGTCACCACCAGCGCGTGGATGATGCTCCAGCGCAATCTGCTCTACACGGCGGTGACCCGCGCCAAGAAGCTGGTCGTC
CTCGTCGGTTCGCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTGTCGGCGGGACGCCGGTGCACGGCCCTGGACTTCCG
GCTCTCCGGCGTCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)

AAA domain (AAA_30)

(351-530)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

Helix-hairpin-helix domain (HHH_5)

(105-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.53

100

0.366