Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OH790_RS27040 Genome accession   NZ_CP109349
Coordinates   6021665..6023587 (-) Length   640 a.a.
NCBI ID   WP_202201656.1    Uniprot ID   A0ABQ3TIN5
Organism   Streptomyces sp. NBC_01568     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6016665..6028587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH790_RS27020 (OH790_26965) - 6018178..6019185 (-) 1008 WP_405814425.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OH790_RS27025 (OH790_26970) - 6019182..6019784 (-) 603 WP_405814423.1 hypothetical protein -
  OH790_RS27030 (OH790_26975) - 6019878..6020987 (+) 1110 WP_399543517.1 RNA polymerase sigma factor -
  OH790_RS27035 (OH790_26980) - 6021047..6021568 (-) 522 WP_202201655.1 GNAT family N-acetyltransferase -
  OH790_RS27040 (OH790_26985) rcrQ 6021665..6023587 (-) 1923 WP_202201656.1 ABC transporter ATP-binding protein Regulator
  OH790_RS27045 (OH790_26990) rcrP 6023584..6025317 (-) 1734 WP_202201657.1 ABC transporter ATP-binding protein Regulator
  OH790_RS27050 (OH790_26995) - 6025467..6026915 (-) 1449 WP_202201658.1 FGGY family carbohydrate kinase -
  OH790_RS27055 (OH790_27000) - 6027010..6027315 (-) 306 WP_202201659.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68884.41 Da        Isoelectric Point: 5.2976

>NTDB_id=674759 OH790_RS27040 WP_202201656.1 6021665..6023587(-) (rcrQ) [Streptomyces sp. NBC_01568]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAHDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTK
QQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTIQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVLVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHTLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAEVPERPEELRGQVTFDKV
SFRYEPDKPLIDNLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRTGIGMVLQDTWL
FGGTIAENIAYGASRAVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEAT
SSVDTRTEVLIQKAMARLARGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASDGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=674759 OH790_RS27040 WP_202201656.1 6021665..6023587(-) (rcrQ) [Streptomyces sp. NBC_01568]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCTGTT
GCGGCAGCTCGCCCACGACCGGGCCAAGATCTGGGGCATGGTCGCCGCCGTCGTCGGCAGCGTCGGCTGTGCGGTGGTCG
GCCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGCGAGATGCCGGCCGGAACCACCAAG
CAGCAGGCGCTGGACGGCCTGCGGGCCCGGGGCCAGGACGGTATGGCGGACATGCTCGCCGGTACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGCGCCGTCGGGGTCGTCGCGATCTGGGCCCTGGTGGTCTTCACCCTGGCGGGCCTGCTGATGC
TGGTCGCCACGAGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTGCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACATCGG
CCAGACGATCCAGCAGACGATGGGCCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTCCTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGTCGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACACCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTCTACGAGCTGCTGG
ACGCGGCGGAGCAGGAGCCGGACGCCGAGGTTCCGGAGCGCCCGGAGGAGCTGCGCGGTCAGGTCACCTTCGACAAGGTG
TCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGACAACCTCTCGCTCACGGTCGAGCCGGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAAATCGCCC
TGGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCACCGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCCGAGAACATCGCCTACGGTGCTTCGCGCGCGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCCGACCGGTTCATCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGAGCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTGGCACGCGGCCGTACCTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGTTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCCTCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.563

0.386