Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA20_RS30400 Genome accession   NZ_CP109344
Coordinates   6681246..6683171 (-) Length   641 a.a.
NCBI ID   WP_330244540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01579     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6676246..6688171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA20_RS30385 (OHA20_30440) - 6676562..6677821 (+) 1260 WP_267005299.1 NAD(P)/FAD-dependent oxidoreductase -
  OHA20_RS30390 (OHA20_30445) dnaG 6677972..6679876 (+) 1905 WP_330244542.1 DNA primase -
  OHA20_RS30395 (OHA20_30450) - 6680102..6681229 (+) 1128 WP_330244541.1 RNA polymerase sigma factor -
  OHA20_RS30400 (OHA20_30455) rcrQ 6681246..6683171 (-) 1926 WP_330244540.1 ABC transporter ATP-binding protein Regulator
  OHA20_RS30405 (OHA20_30460) rcrP 6683171..6684904 (-) 1734 WP_328627886.1 ABC transporter ATP-binding protein Regulator
  OHA20_RS30410 (OHA20_30465) - 6685075..6686520 (-) 1446 WP_330244539.1 FGGY family carbohydrate kinase -
  OHA20_RS30415 (OHA20_30470) - 6686581..6686886 (-) 306 WP_326608456.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69176.46 Da        Isoelectric Point: 5.2076

>NTDB_id=674594 OHA20_RS30400 WP_330244540.1 6681246..6683171(-) (rcrQ) [Streptomyces sp. NBC_01579]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRRTNSGLADLLSGVDFTPGRGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGVMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMEDGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=674594 OHA20_RS30400 WP_330244540.1 6681246..6683171(-) (rcrQ) [Streptomyces sp. NBC_01579]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTCTACGGGATGCTGGCCGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGCTGCCGGAGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGACTGCGCAGGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
CGGCCGGGGCATCGACTTCGATGCGGTGGGCAACGTCCTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTCATCATGATGTTCT
GGATCTCACCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCCCTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGCGGGTTGCGGGTCGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACACAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTTGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCCGGTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGTTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGGACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(48-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.033

93.916

0.376