Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA59_RS15230 Genome accession   NZ_CP109333
Coordinates   3226269..3228194 (+) Length   641 a.a.
NCBI ID   WP_406426959.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01589     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3221269..3233194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA59_RS15215 (OHA59_15235) - 3222554..3222859 (+) 306 WP_406435042.1 YtxH domain-containing protein -
  OHA59_RS15220 (OHA59_15240) - 3222920..3224365 (+) 1446 WP_406426956.1 FGGY family carbohydrate kinase -
  OHA59_RS15225 (OHA59_15245) rcrP 3224536..3226269 (+) 1734 WP_406426957.1 ABC transporter ATP-binding protein Regulator
  OHA59_RS15230 (OHA59_15250) rcrQ 3226269..3228194 (+) 1926 WP_406426959.1 ABC transporter ATP-binding protein Regulator
  OHA59_RS15235 (OHA59_15255) - 3228211..3229338 (-) 1128 WP_406426960.1 RNA polymerase sigma factor -
  OHA59_RS15240 (OHA59_15260) dnaG 3229564..3231468 (-) 1905 WP_406426961.1 DNA primase -
  OHA59_RS15245 (OHA59_15265) - 3231619..3232878 (-) 1260 WP_406426963.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69199.49 Da        Isoelectric Point: 5.2028

>NTDB_id=674403 OHA59_RS15230 WP_406426959.1 3226269..3228194(+) (rcrQ) [Streptomyces sp. NBC_01589]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATERASLYGMLTACVLSVGLSVVGPKILGRATDLVFAGVIGRRLPEGT
TKEQAVEGLRKTNSGLADLLSGVDFIPGHGIDFDAVGDVLLTALAVYVGAGLLMLVATRLSIRIINQVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHSLVKVFGRQEESARDFAEQNDALYEASFRAQFNSGVMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDARTGGRPAELLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAQMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=674403 OHA59_RS15230 WP_406426959.1 3226269..3228194(+) (rcrQ) [Streptomyces sp. NBC_01589]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCATCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAGGGCCTCGCTCTACGGGATGCTGACGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAGGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGCTGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGCCTGGCCGACCTGCTCTCCGGGGTCGACTTCATCCC
CGGCCACGGCATCGACTTCGATGCAGTGGGCGACGTATTGCTGACGGCACTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGTCGATCCGGATCATCAACCAGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCACGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGAAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACTC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAGGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGTTGCGGGTGGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGACCCGACGCCCGGACCGGTGGGCGCCCGGCAGAGCTGCTCGGCAGCGTCTCGCTGGAGAAG
GTGTCGTTCAGGTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACGTGGCGCAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGTTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGATGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGAGGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(50-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.867

93.916

0.374