Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   MUB28_RS03555 Genome accession   NZ_CP094945
Coordinates   668619..668912 (+) Length   97 a.a.
NCBI ID   WP_002890617.1    Uniprot ID   J7TXL7
Organism   Streptococcus thermophilus strain VHProbi R08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 660731..668912 668619..668912 within 0


Gene organization within MGE regions


Location: 660731..668912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB28_RS03520 (MUB28_03520) - 660731..661500 (+) 770 Protein_645 SDR family NAD(P)-dependent oxidoreductase -
  MUB28_RS03525 (MUB28_03525) - 661513..661650 (+) 138 WP_014727401.1 hypothetical protein -
  MUB28_RS03530 (MUB28_03530) - 661760..664750 (+) 2991 WP_014727402.1 type I restriction endonuclease subunit R -
  MUB28_RS03535 (MUB28_03535) - 664771..665916 (+) 1146 WP_014727403.1 AbiH family protein -
  MUB28_RS03540 (MUB28_03540) - 666078..666797 (+) 720 WP_014727404.1 hypothetical protein -
  MUB28_RS03545 (MUB28_03545) - 666849..668099 (+) 1251 WP_014727405.1 restriction endonuclease subunit S -
  MUB28_RS03550 (MUB28_03550) - 668264..668629 (+) 366 WP_014727406.1 type II toxin-antitoxin system RelE/ParE family toxin -
  MUB28_RS03555 (MUB28_03555) HI0659 668619..668912 (+) 294 WP_002890617.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10778.52 Da        Isoelectric Point: 5.8962

>NTDB_id=674403 MUB28_RS03555 WP_002890617.1 668619..668912(+) (HI0659) [Streptococcus thermophilus strain VHProbi R08]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGFSQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=674403 MUB28_RS03555 WP_002890617.1 668619..668912(+) (HI0659) [Streptococcus thermophilus strain VHProbi R08]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACAAAGGAAGAAATCCTGGAAAGTGA
TCTGCGGGTCGCGATTATGACGGAGCTAATCGAGGCTCGGCATGAAAAGGGCTTTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACGGGAAAGACCAGTCCTCAATTGGACACGGTCTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTTGCTGTCGTCCCACTGGAACAAGAAAAGCTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TXL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557