Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA04_RS27245 Genome accession   NZ_CP109330
Coordinates   5995416..5997149 (-) Length   577 a.a.
NCBI ID   WP_406501512.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01590     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5990416..6002149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA04_RS27235 (OHA04_27210) - 5992317..5993411 (+) 1095 WP_405712408.1 RNA polymerase sigma factor -
  OHA04_RS27240 (OHA04_27215) - 5993479..5995416 (-) 1938 WP_405712406.1 ABC transporter ATP-binding protein -
  OHA04_RS27245 (OHA04_27220) rcrP 5995416..5997149 (-) 1734 WP_406501512.1 ABC transporter ATP-binding protein Regulator
  OHA04_RS27250 (OHA04_27225) - 5997366..5998811 (-) 1446 WP_405712402.1 FGGY family carbohydrate kinase -
  OHA04_RS27255 (OHA04_27230) - 5998925..5999224 (-) 300 WP_405712400.1 YtxH domain-containing protein -
  OHA04_RS27275 (OHA04_27250) - 6000427..6001524 (-) 1098 WP_406501513.1 hypothetical protein -
  OHA04_RS27280 (OHA04_27255) - 6001629..6002081 (-) 453 WP_406501514.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62710.91 Da        Isoelectric Point: 5.7533

>NTDB_id=674360 OHA04_RS27245 WP_406501512.1 5995416..5997149(-) (rcrP) [Streptomyces sp. NBC_01590]
MLIKLLRAYLVPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIAQVVCNMGAVYYGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGSNQGLTDVALSTGRLMAL
MFPTVMTVVNVSSIAVIWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVRKLLARGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPGLLAKTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTALEHGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSHETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=674360 OHA04_RS27245 WP_406501512.1 5995416..5997149(-) (rcrP) [Streptomyces sp. NBC_01590]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGTTCCGTACAGAAAACCCATCCTGCTGCTGGTCCTCCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCACACTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGCCCAGGTGGTCTGCAACATGGGGGCCGTTTACTACGGCGCC
CGTACCGCGTCCGCCCTCGGCCGTGATGTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGCGAGGTGGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCGGCTCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTGAGGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
GTTACGAGGAGGAGCGGTTCCGCGGCTCCAACCAGGGGCTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCCACCGTTATGACGGTCGTGAACGTCTCGTCGATCGCGGTGATCTGGTTCGGTGCCCACCGCATCGACAGCGG
GGGCATGGAGATCGGAGCGCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCCGTCAAGCCGGTCCGCAAGCTGCTCGCCCGCGGTCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGTCTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTGGACGGCACGGATGTGCGG
ACGCTGGAGCCGGGGCTGCTGGCGAAGACCGTGGGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTCGCACAGGCCAAGGAGTTCG
TCACGGCGCTGGAGCACGGTCTGGACGCGCCGATCTCGCAGGGCGGCACCAATGTGTCGGGCGGGCAGCGGCAGCGTCTG
GCCATCGCCAGGACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCGCTCTCGCACGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTGGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.559

100

0.404