Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MTR78_RS06270 Genome accession   NZ_CP094933
Coordinates   1332939..1334783 (+) Length   614 a.a.
NCBI ID   WP_247013398.1    Uniprot ID   -
Organism   Paraclostridium bifermentans strain HD0315_2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1327939..1339783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR78_RS06260 (MTR78_06275) - 1330147..1330590 (-) 444 WP_021432616.1 MarR family winged helix-turn-helix transcriptional regulator -
  MTR78_RS06265 (MTR78_06280) - 1330742..1332946 (+) 2205 WP_247013397.1 ABC transporter ATP-binding protein -
  MTR78_RS06270 (MTR78_06285) rcrQ 1332939..1334783 (+) 1845 WP_247013398.1 ABC transporter ATP-binding protein Regulator
  MTR78_RS06275 (MTR78_06290) cspD 1334894..1335097 (+) 204 WP_021429181.1 cold-shock protein CspD -
  MTR78_RS06280 (MTR78_06295) asnB 1335296..1337134 (+) 1839 WP_247013399.1 asparagine synthase (glutamine-hydrolyzing) -
  MTR78_RS06285 (MTR78_06300) - 1337154..1337843 (+) 690 WP_053830912.1 response regulator transcription factor -
  MTR78_RS06290 (MTR78_06305) - 1337846..1339300 (+) 1455 WP_220796875.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68347.05 Da        Isoelectric Point: 6.7347

>NTDB_id=674317 MTR78_RS06270 WP_247013398.1 1332939..1334783(+) (rcrQ) [Paraclostridium bifermentans strain HD0315_2]
MSNKKQSTPKMGGPMGGMRGTEKAKDFKGTMKNLFNYLKPYRISIFIVVIFAIGSSAFSIVGPKVLGKATTEIFEGLIRK
VSNQGNAGIDFNYIGKVLLILLGLYVISALFSFVQSFIVSGISQKVSYKLRKEISEKINRMPLKYFDKRTHGEVLSRITN
DIDTLSQNLNQIMTQIITAVTTVIGVLIMMLSISWQMTIASLLILPISMIIIGFIVKNSQSHFKSQQKYLGHVNGQVEET
YGGHNIVKAFNREDAAIAEFNELNDKLYESAWKSQFLSGMMMPMMTFIGNLGYVLVSILGGYFTIKKTIQVGDILSFIQY
VRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEEEEIQVSDHPVSVENIKGDVSFDHVNFGYSEDKIIINDFTTNIKAG
QKVAIVGPTGAGKTTVVKLLMRFYDVNKGAILIDGKNINDFNRADLRSLFGMVLQDTWLFNGSIMENIRYSKLNATDEEV
IEASKAAHVHHFVKTLPAGYSMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLMEGR
TSFIIAHRLSTIKDADLILVMKDGDIIEQGSHEELLKADGFYASLYNSQFEDCE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=674317 MTR78_RS06270 WP_247013398.1 1332939..1334783(+) (rcrQ) [Paraclostridium bifermentans strain HD0315_2]
ATGAGTAATAAAAAGCAATCTACTCCTAAAATGGGCGGACCTATGGGAGGAATGAGAGGAACAGAAAAAGCAAAAGATTT
TAAAGGTACAATGAAAAATCTTTTCAATTATTTAAAACCTTACAGAATATCTATATTTATAGTAGTTATATTTGCAATAG
GGAGTTCTGCATTCTCTATAGTAGGACCTAAGGTATTAGGTAAAGCTACTACTGAGATATTTGAAGGACTGATTAGAAAA
GTTAGTAATCAAGGAAATGCTGGGATAGATTTTAATTATATAGGCAAAGTTCTTTTAATTTTATTAGGGCTATATGTAAT
AAGTGCGTTATTCTCATTTGTTCAATCATTTATAGTTTCTGGAATATCTCAAAAGGTTTCATATAAACTGAGAAAAGAAA
TTTCAGAAAAAATAAATCGTATGCCACTTAAGTATTTTGATAAAAGAACACATGGTGAAGTACTATCAAGAATTACAAAT
GATATAGATACGTTAAGTCAAAACTTAAATCAAATTATGACTCAAATTATTACAGCTGTTACAACTGTAATAGGGGTTCT
TATAATGATGTTATCTATAAGTTGGCAAATGACTATAGCTTCATTATTAATATTACCTATATCTATGATAATAATAGGTT
TTATTGTTAAGAACTCACAAAGCCACTTTAAATCTCAACAAAAATATTTAGGTCATGTTAATGGTCAAGTTGAAGAAACT
TATGGTGGACACAATATAGTTAAAGCATTCAATAGAGAAGATGCAGCTATAGCAGAGTTTAATGAGTTAAATGATAAGTT
ATATGAATCTGCATGGAAATCTCAATTCCTATCTGGAATGATGATGCCGATGATGACGTTTATAGGTAACTTAGGTTATG
TTTTAGTATCTATACTAGGTGGATACTTTACTATAAAGAAAACTATTCAAGTTGGGGATATACTTTCATTTATACAATAT
GTAAGAAGTTTTAACCAACCAATAGCTCAAACTGCACAAGTTGCAAATATAATGCAATCTATGGCAGCAGCAGCAGAAAG
AGCATTTGAATTTTTAGATGAAGAAGAAGAAATCCAAGTAAGTGATCATCCAGTTAGCGTTGAGAATATCAAAGGGGATG
TTTCTTTTGATCATGTTAACTTTGGATATTCTGAAGATAAAATAATAATAAATGACTTTACAACAAATATAAAAGCAGGA
CAAAAAGTAGCTATAGTTGGGCCTACGGGTGCAGGTAAAACTACAGTTGTAAAATTATTAATGCGTTTTTATGATGTAAA
TAAAGGTGCTATACTGATAGATGGTAAAAATATAAATGATTTTAACAGAGCTGACTTACGTAGCTTATTTGGAATGGTTT
TACAAGACACATGGCTATTTAATGGTAGCATAATGGAAAACATAAGATACTCTAAGCTTAATGCTACTGATGAAGAGGTT
ATAGAGGCATCTAAAGCAGCTCATGTGCATCACTTTGTAAAAACTCTTCCAGCAGGATATAGCATGGAATTAAATGAAGA
AGCTAGTAATGTATCTCAAGGTCAAAAGCAACTTTTAACTATAGCTCGTGCGATTTTAGCAGACCCTAAAATACTTATAT
TAGATGAAGCTACTAGTTCAGTTGATACTCGTACAGAAGTTTTAATACAAAAAGCTATGGAAAATCTTATGGAAGGTAGA
ACAAGCTTTATAATAGCTCATAGATTATCAACTATAAAAGATGCAGATTTAATACTAGTTATGAAAGATGGAGATATAAT
TGAGCAAGGAAGCCATGAAGAATTATTAAAAGCTGATGGATTCTATGCATCTTTATATAATAGTCAATTTGAAGACTGTG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-327)

ABC transporter (ABC_tran)

(391-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.877

95.44

0.495