Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG978_RS13645 Genome accession   NZ_CP109327
Coordinates   2914198..2915931 (+) Length   577 a.a.
NCBI ID   WP_326765491.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01591     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2909198..2920931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG978_RS13610 (OG978_13615) - 2909279..2910202 (-) 924 WP_326765487.1 glycosyltransferase 87 family protein -
  OG978_RS13615 (OG978_13620) - 2910824..2911279 (+) 456 WP_326765488.1 hypothetical protein -
  OG978_RS13635 (OG978_13640) - 2912214..2912513 (+) 300 WP_326765489.1 YtxH domain-containing protein -
  OG978_RS13640 (OG978_13645) - 2912583..2914028 (+) 1446 WP_326765490.1 FGGY family carbohydrate kinase -
  OG978_RS13645 (OG978_13650) rcrP 2914198..2915931 (+) 1734 WP_326765491.1 ABC transporter ATP-binding protein Regulator
  OG978_RS13650 (OG978_13655) - 2915931..2917862 (+) 1932 WP_326765492.1 ABC transporter ATP-binding protein -
  OG978_RS13655 (OG978_13660) - 2917926..2919020 (-) 1095 WP_326765493.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62730.89 Da        Isoelectric Point: 5.2620

>NTDB_id=674248 OG978_RS13645 WP_326765491.1 2914198..2915931(+) (rcrP) [Streptomyces sp. NBC_01591]
MLIKLLRAYLGPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIGQVVCNMGAVYYGA
RTAAALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGSNTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVLWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETESSVVP
PVEPVRKLLARGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTALEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALTQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=674248 OG978_RS13645 WP_326765491.1 2914198..2915931(+) (rcrP) [Streptomyces sp. NBC_01591]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAGAAAGCCCATCCTGCTCCTGGTCCTCCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGGGACACCGGCTACA
TCCTCGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGGCCAGGTGGTCTGCAACATGGGGGCCGTCTACTACGGCGCC
CGTACCGCGGCCGCCCTCGGCCGTGATGTCCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCACGTGAGCTCGG
ACGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTGCTGATGACGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTACTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGTGACG
GTTACGAGGAGGAGCGGTTCCGCGGCTCCAACACCGAGCTGACGGATGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCCACCGTGATGACGGTCGTGAACGTCTCGTCGATCGCCGTGCTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTCTGTGCCGAGCGCGTCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCCGTCGAGCCGGTCCGCAAGCTGCTCGCCCGCGGTCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGTACGGATGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAGGACCGTGAGTCTCGTACCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGTTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACCGCGCTGGAGCACGGTCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCGGGCGGGCAGCGGCAGCGGCTG
GCCATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCGCTCACGCAGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCACCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.794

100

0.402