Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTP21_RS00710 Genome accession   NZ_CP094880
Coordinates   157820..158542 (-) Length   240 a.a.
NCBI ID   WP_243975604.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152820..163542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS00685 - 153998..154489 (+) 492 WP_243977069.1 type II secretion system protein M -
  MTP21_RS00690 - 154491..155252 (+) 762 WP_243975602.1 type II secretion system protein N -
  MTP21_RS00695 cysQ 155537..156364 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MTP21_RS00700 nudE 156409..156978 (-) 570 WP_014230545.1 ADP compounds hydrolase NudE -
  MTP21_RS00705 nfuA 157139..157723 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  MTP21_RS00710 comF 157820..158542 (-) 723 WP_243975604.1 phosphoribosyltransferase family protein Machinery gene
  MTP21_RS00715 bioH 158627..159394 (+) 768 WP_243975606.1 pimeloyl-ACP methyl ester esterase BioH -
  MTP21_RS00720 - 159506..159970 (+) 465 WP_020335700.1 hypothetical protein -
  MTP21_RS00725 - 160053..162383 (-) 2331 WP_243975608.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27581.77 Da        Isoelectric Point: 8.8670

>NTDB_id=673871 MTP21_RS00710 WP_243975604.1 157820..158542(-) (comF) [Vibrio natriegens strain WPAGA4]
MLSHHWQNIMHRVLGSQCGLCRLPLNTSQPPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEALTRLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYADSQRGHTKTQREQNLQGAFILNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=673871 MTP21_RS00710 WP_243975604.1 157820..158542(-) (comF) [Vibrio natriegens strain WPAGA4]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGCTCGGTAGTCAATGTGGTTTGTGCCGTCTGCCACTGAACAC
ATCACAACCGCCTAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGATACGGTGTGTGGCGAGTGCCTGGCCGAACCACCGCCCTGGCAACGACTC
ATCACGCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAACGCTTTAAGGATCATGGCGAGAGTTGGCACGTAGA
AGCATTAACGCGATTGCTCGCGGCGCGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCATTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACATTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAG
GTATTTCGTCGTATCCAATACGCAGACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TATCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

50.633

98.75

0.5