Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BTUAT1_RS07835 Genome accession   NZ_AP014928
Coordinates   1560332..1561111 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain TUAT1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555332..1566111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTUAT1_RS07815 (BTUAT1_15270) trmFO 1556036..1557340 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BTUAT1_RS07820 (BTUAT1_15280) xerC 1557403..1558320 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  BTUAT1_RS07825 (BTUAT1_15290) hslV 1558335..1558880 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  BTUAT1_RS07830 (BTUAT1_15300) hslU 1558897..1560297 (+) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  BTUAT1_RS07835 (BTUAT1_15310) codY 1560332..1561111 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BTUAT1_RS07840 (BTUAT1_15320) flgB 1561400..1561789 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  BTUAT1_RS07845 (BTUAT1_15330) flgC 1561789..1562241 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  BTUAT1_RS07850 (BTUAT1_15340) fliE 1562253..1562570 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  BTUAT1_RS07855 (BTUAT1_15350) fliF 1562621..1564213 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  BTUAT1_RS07860 (BTUAT1_15360) fliG 1564225..1565241 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  BTUAT1_RS07865 (BTUAT1_15370) fliH 1565234..1565998 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=67383 BTUAT1_RS07835 WP_007499612.1 1560332..1561111(+) (codY) [Bacillus altitudinis strain TUAT1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=67383 BTUAT1_RS07835 WP_007499612.1 1560332..1561111(+) (codY) [Bacillus altitudinis strain TUAT1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment