Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA21_RS06830 Genome accession   NZ_CP094825
Coordinates   1385437..1387824 (-) Length   795 a.a.
NCBI ID   WP_262560918.1    Uniprot ID   -
Organism   Staphylococcus ureilyticus strain IVB6236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380437..1392824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA21_RS06810 (MUA21_06780) - 1381404..1381730 (-) 327 WP_046208110.1 DUF1292 domain-containing protein -
  MUA21_RS06815 (MUA21_06785) ruvX 1381747..1382175 (-) 429 WP_019469412.1 Holliday junction resolvase RuvX -
  MUA21_RS06820 (MUA21_06790) - 1382179..1382439 (-) 261 WP_046208109.1 IreB family regulatory phosphoprotein -
  MUA21_RS06825 (MUA21_06795) alaS 1382507..1385137 (-) 2631 WP_107525719.1 alanine--tRNA ligase -
  MUA21_RS06830 (MUA21_06800) recD2 1385437..1387824 (-) 2388 WP_262560918.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA21_RS06835 (MUA21_06805) - 1387829..1388515 (-) 687 WP_336606217.1 tetratricopeptide repeat protein -
  MUA21_RS06840 (MUA21_06810) mnmA 1388701..1389813 (-) 1113 WP_107525721.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA21_RS06845 (MUA21_06815) - 1389814..1390956 (-) 1143 WP_262560919.1 cysteine desulfurase family protein -
  MUA21_RS06850 (MUA21_06820) sal 1391017..1392648 (-) 1632 WP_262560920.1 Sal family ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89668.21 Da        Isoelectric Point: 4.5585

>NTDB_id=673482 MUA21_RS06830 WP_262560918.1 1385437..1387824(-) (recD2) [Staphylococcus ureilyticus strain IVB6236]
MDNPTLFNNSMIKGTVDAILFQNKDNFYTVLKVDTIESNEDFDSMPTVVGFFPEIAEGDVYTFKGQVVSHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAISDILNDPSVLEKVPSLPGKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQVYLGDTLNIVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQSPNEVIELQQLENMIQILVEDTKLVKQEHELAIPSLYYSELKSVQNLYRNYTYTNKLKEIE
QSELLLEIGEIEQRNQVTYANSQRDALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLETMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLIEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCSTEQISSVVEKVVSSAV
KKGYDMSDIQVLAPMYKGSAGIKKLNAVLQTILNPKEKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFDGNEITFVRQDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLNTHGQVRMTQLCSFLKTYFNNDDRKDEVAVEDTFDATTILTEENIYKINPMINMGDISPYDFVEH

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=673482 MUA21_RS06830 WP_262560918.1 1385437..1387824(-) (recD2) [Staphylococcus ureilyticus strain IVB6236]
ATGGACAACCCTACATTATTCAATAATTCAATGATTAAAGGTACTGTAGATGCTATCTTGTTTCAAAACAAAGACAATTT
TTATACTGTTTTAAAAGTAGATACGATAGAATCTAATGAAGATTTTGATTCTATGCCTACAGTTGTAGGGTTCTTTCCAG
AAATTGCTGAAGGCGATGTTTATACTTTTAAAGGTCAAGTCGTTTCACATCCTAAATATGGTAAACAGTTAAAAGCTGAA
ACGTTTGAAAAAGAGCTGCCTCAAACCAAAGAGGCTATTATTAGCTATTTATCTAGTGATTTATTTAAAGGAATAGGTAA
AAAAACAGCTCAAAATATTGTGAATACACTTGGAGAAAATGCTATTTCAGACATTTTAAATGACCCATCTGTTTTAGAAA
AAGTACCTAGTTTACCTGGGAAAAAACAAAAGCAAATTGCTGAACAAATTGCGAGTAATCAAGAAACAGAACAAATTATT
ATTCGATTACATGATTTAGGATTTGGGCCTAAACTCGCTATGGCAATCTATCAGGTTTATTTAGGTGATACACTTAATAT
TGTAGAAAATAAACCCTATCAATTAGTTTACGACGTGAAAGGAATCGGTTTTAACAAAGCGGATACTTTAGCACGAAATG
TGGGTATTCAATTTAATGATGATGAGCGTTTAAAAGCGGGTTTATTATATGTATTAGAAGAAGAATGTATTAAGCAAGGG
CATACATACTTACCAACACAAAATGTATTAGAAATGACACAAGATATGTTATCACAATCACCAAATGAAGTGATTGAACT
TCAACAATTAGAAAATATGATTCAAATCTTAGTTGAAGATACCAAATTAGTAAAACAGGAACACGAATTAGCAATTCCTA
GTTTATACTATTCGGAACTTAAAAGTGTTCAAAACTTATATCGTAATTACACCTATACGAATAAATTAAAAGAAATTGAG
CAGTCTGAATTATTATTAGAAATTGGTGAAATCGAACAACGCAATCAAGTCACTTATGCTAATTCCCAAAGAGATGCGCT
ACAGACTGCAATCAATAGTAAAGTTATGCTGCTAACTGGCGGGCCAGGAACAGGAAAAACTACTGTGATTAAAGGTATTG
TCGAATTATATGCAGAAATACATGGTTTATCTTTAGATTATGATGATTATCAAAACGATGATTATCCAGTTGTATTAGCA
GCACCTACAGGTAGAGCTTCAAAACGATTGGCTGAATCTACAGGGTTGGAAACTATGACTATACATCGATTGATAGGTTG
GAATCAAGACACACAGCCAGAAGATATTTTAGATAATGAGATTTCAGCTAAACTAATCATTATTGATGAAATGTCAATGG
TCGACACCTGGCTGTTTCATCAATTTCTTAGCGCGGTACCTATTGATGCCCAAGTGATATTAGTAGGTGACGAAGATCAG
TTGCCTTCCGTAGGCCCAGGACAAGTGTTCAAAGATCTCATTGATTCTAAAGTTATACCTAGAGTGAATCTGATTGAAGT
TTACCGACAACAAGATGGGTCTAGTATCATAGAATTAGCGCATAGAATGAAATTGGGAGAACCGATTGATATCACACAAA
GATTTCATGATCGTAACTTTATTAATTGTTCAACTGAACAAATATCTTCAGTTGTTGAAAAGGTTGTTTCAAGTGCTGTT
AAAAAAGGTTATGATATGAGTGATATACAAGTATTAGCCCCTATGTATAAAGGTTCTGCAGGTATAAAAAAATTAAATGC
TGTATTGCAAACAATCTTAAACCCTAAAGAAAAGGATACGCGTGAAATTGAATTCGGTGATGTTGTCTTTAGAAAAGGGG
ATAAGGTGCTACAGCTAGTAAATAGGCCGAGTGATAATATATTTAATGGCGATATTGGTGTGATTGTTGGCATATTTTGG
GCAAAAGAAAATGCCTTAAATAAAGATGTATTGGTCGTTGATTTTGACGGAAATGAAATTACTTTTGTAAGACAAGATTT
GTTAGAATTAACACATGCATATTGTACGTCTATTCACAAATCGCAAGGTTCTGAATTTCCAATTGTAATTATGCCTATGG
TTAAGCAATATTTTAGAATGTTACAAAAACCTATATTATATACAGGATTAACAAGAGCTAAGCAATCACTAGTATTTCTG
GGTGATCCACAAGCTTTTGAAATCGGTTTAAATACACATGGTCAAGTGAGAATGACTCAGCTCTGTTCATTCTTAAAAAC
GTATTTTAATAATGATGATCGTAAAGATGAGGTTGCAGTTGAAGATACGTTTGATGCCACGACTATTTTAACAGAAGAAA
ATATATATAAAATTAATCCTATGATTAATATGGGAGATATTTCGCCATATGATTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.946

99.748

0.508