Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG784_RS13805 Genome accession   NZ_CP109298
Coordinates   2992082..2993815 (+) Length   577 a.a.
NCBI ID   WP_406325943.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01617     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987082..2998815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG784_RS13775 (OG784_13790) - 2988461..2988658 (-) 198 WP_313937171.1 hypothetical protein -
  OG784_RS13795 (OG784_13810) - 2990033..2990338 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OG784_RS13800 (OG784_13815) - 2990399..2991844 (+) 1446 WP_326744328.1 FGGY family carbohydrate kinase -
  OG784_RS13805 (OG784_13820) rcrP 2992082..2993815 (+) 1734 WP_406325943.1 ABC transporter ATP-binding protein Regulator
  OG784_RS13810 (OG784_13825) rcrQ 2993815..2995740 (+) 1926 WP_329451911.1 ABC transporter ATP-binding protein Regulator
  OG784_RS13815 (OG784_13830) - 2995757..2996875 (-) 1119 WP_313937175.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62808.84 Da        Isoelectric Point: 5.3874

>NTDB_id=673440 OG784_RS13805 WP_406325943.1 2992082..2993815(+) (rcrP) [Streptomyces sp. NBC_01617]
MLIKLLRAYLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAISIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQGRLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673440 OG784_RS13805 WP_406325943.1 2992082..2993815(+) (rcrP) [Streptomyces sp. NBC_01617]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAAAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAAGGGGACACCGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCATCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCCTGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGGGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGTTGACCGACGTGGCGCTCTCCACGGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAACGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAACTGCGCGCTCACGGTCATCTGGAGGTGCGGGCCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGAGCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACACTGCTCGGCCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCACAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAACGACTC
GCGATCGCGAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGTCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.275

100

0.406